Congratulations Arjun (top right)! See the details here.
Congratulations to our 3rd year Biochemistry & Biomedical Sciences students upon completion of their research projects! Both will be staying on as summer research students.
Tammy Lau – The Importance of Protocol Design for RNA-Seq in the Ongoing Development of a Novel Technology for Tissue Specific Gene Expression Profiling in C. elegans
Arjun Sharma – The Glycopeptide Resistance Predictor
Suman Virdee – Developing a Galaxy based Pipeline for RNA-Seq Analysis in Stem Cell Biology
Kirill Pankov – The Cytochrome P450 (CYP) Superfamily in the Cnidarian Phylum
Jonsson Liu – Clinical virulence detection and Clostridium difficile clonality
Annie Cheng – Predicting Plasmid-Mediated Antimicrobial Resistance from Whole Genome Sequencing
Godwin Chan – Using the Galaxy Platform to Increase Accessibility for Structure Determination via Cryo-Electron Microscopy
Congratulations to 4th Year Biomedical Discovery & Commercialization student and McArthur lab member Suman Virdee for her CIHR Undergraduate Summer Studentship Award for her summer project “Development and implementation of computational tools to dissect cancer stem cell circuitry”, a joint project between our laboratory and that of Dr. Kristin Hope!
3rd year Biochemistry & Biomedical Sciences student Tammy Lau has joined us for her Biochem 3A03 (Biochemical Research Practice) course. Tammy will be collaborating with Dr. Lesley MacNeil in development of a bioinformatics pipeline for a new technology for tissue-specific expression profiling in the important model organism C. elegans. Support from this project comes from a new Michael G. DeGroote Institute for Infectious Disease Research (McMaster) Research Grant. Welcome Tammy!
This month we say farewell to Briony Lago as she returns to her undergraduate studies in Chemical Biology at McMaster. Briony joined us as part of her Chemical Biology Co-Op program and worked on both human muscle atrophy and zebrafish toxicology transcriptome studies, as well a curation of the Comprehensive Antibiotic Resistance Database. Her publications are below, with more on the way. Briony was also awarded a 2016 IIDR Summer Student Fellowship for her work. Good luck Briony!
- Jia, B., A.R. Raphenya, B. Alcock, N. Waglechner, P. Guo, K.K. Tsang, B.A. Lago, B.M. Dave, S. Pereira, A.N. Sharma, S. Doshi, M. Courtot, R. Lo, L.E. Williams, J.G. Frye, T. Elsayegh, D. Sardar, E.L. Westman, A.C. Pawlowski, T.A. Johnson, F.S.L. Brinkman, G.D. Wright, & A.G. McArthur. 2017. CARD 2017: expansion and model-centric curation of the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research, 45, D566-573.
- Williams, L.M, B.A. Lago, A.G. McArthur, A.R. Raphenya, N. Pray, N. Saleem, S. Salas, K. Paulson, R.S. Mangar, Y. Liu, A.H. Vo, & J.A. Shavit. 2016. The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development. Aquatic Toxicology, 180, 141-154.
Kara Tsang (graduate, McMaster BDC) – Kara did her BiomedDC 4A15 thesis in the lab, focused on Pseudomonas resistome prediction and cystic fibrosis-associated metagenomic sequencing and starts September 2016 as MSc student in the area of clinical AMR analytics, particularly metagenomics. Her work will be part of our recently funded Genome Canada grants, as well as part of McMaster’s clinical genome sequencing efforts.
Krishna Srinivasan (graduate, McMaster Biology) – Krishna just finished his undergraduate degree in McMaster’s Biology department, with a thesis in environmental toxicology. He starts as a MSc student September 2016, collaborating with the Jenny lab (UAlabama) on our recently funded NIH grant examining the role of MTF-1 in lens development and cataractogenesis.