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McArthur Lab

Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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awards lab members

Congratulations Tiffany Ta!

May 28, 2023May 28, 2023 agmcarthur
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antibiotic resistance bioinformatics databases genomics molecular epidemiology software

Chan Zuckerberg ID and the Comprehensive Antibiotic Resistance Database collaborate to add Resistome prediction to the CZ ID platform

May 25, 2023May 25, 2023 agmcarthur

CARD and CZ ID are thrilled to launch a new CZ ID module that allows researchers to detect and analyze antimicrobial resistance (AMR) genes in

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bioinformatics COVID19 genomics SARS-CoV-2 software virus epidemiology

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL) update

May 25, 2023May 25, 2023 agmcarthur

The SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL) has been updated to version 1.6.2, with an important hotfix to address software version incompatibility for rules using

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COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

SARS-COV-2 outbreak investigation using contact tracing and whole-genome sequencing in an Ontario tertiary care hospital

May 6, 2023May 6, 2023 agmcarthur

Tsang et al. Microbiol Spectr. 2023 Apr 24;e0190022. Genomic epidemiology can facilitate an understanding of evolutionary history and transmission dynamics of a severe acute respiratory

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lab members

Summer Students 2023

May 1, 2023May 6, 2023 agmcarthur

Curation volunteer Kriti Goel (3rd year Biochemistry) will be joining us as a 2023 Summer Student to sketch out how the Comprehensive Antibiotic Resistance Database

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antibiotic resistance big data lab members text mining

Bonne Chance Arman!

April 30, 2023May 6, 2023 agmcarthur

Volunteer starting in 2019, thesis student, summer student, Masters student (2020-2022), and developer, Arman Edalatmand has been a great lab member for over 4 years,

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antibiotic resistance big data databases genomics ontologies presentations

Biocuration 2023

April 24, 2023May 6, 2023 agmcarthur

Alcock, B.P., A.R. Raphenya, A. Edalatmand, & A.G. McArthur. 2023. The Comprehensive Antibiotic Resistance Database – curating the global resistome. Oral presentation at the 16th

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antibiotic resistance big data databases ontologies publications software

CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

April 21, 2023April 21, 2023 agmcarthur

Arman Edalatmand & Andrew G McArthur. 2023. Database, doi: 10.1093/database/baad023. Scientific literature is published at a rate that makes manual data extraction a highly time-consuming

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antibiotic resistance bioinformatics databases genomics lab members molecular epidemiology outreach teaching

CBW & VTEC 2023

April 18, 2023May 6, 2023 agmcarthur

They’re back! Thanks to Karyn Mukiri, Jalees Nasir, and Madeline McCarthy for serving as Teaching Assistants for the re-booted Canadian Bioinformatics Workshop in Infectious Disease

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BDC genomics lab members molecular epidemiology

Congratulations Nisha Tailor & Fatimah Jessa, 2022-2023 Thesis Students!

April 15, 2023April 15, 2023 agmcarthur

Nisha & Fatimah completed the year with their Biomedical Discovery & Commercialization thesis presentations on Shigella bait capture and resistome software accuracy, respectively. Great work

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