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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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Congratulations Amogelang Raphenya on the completion of your M.Sc.!

June 16, 2023June 16, 2023 agmcarthur

While many know of Amogelang (Amos) Raphenya as the Lead CARD Developer and a local, national, and international resource for genomic surveillance of antimicrobial resistance,

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antibiotic resistance big data databases genomics ontologies presentations

Biocuration 2023

April 24, 2023May 6, 2023 agmcarthur

Alcock, B.P., A.R. Raphenya, A. Edalatmand, & A.G. McArthur. 2023. The Comprehensive Antibiotic Resistance Database – curating the global resistome. Oral presentation at the 16th

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antibiotic resistance big data databases ontologies publications software

CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

April 21, 2023April 21, 2023 agmcarthur

Arman Edalatmand & Andrew G McArthur. 2023. Database, doi: 10.1093/database/baad023. Scientific literature is published at a rate that makes manual data extraction a highly time-consuming

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antibiotic resistance awards bioinformatics Co-Op positions databases epidemiology genomics IIDR lab members ontologies presentations

IIDR Trainee Day 2022!

November 16, 2022December 9, 2022 agmcarthur

KARYN MUKIRI – Predicting the total resistome KEATON SMITH – Advancements in curation of the Comprehensive Antibiotic Resistance Database JALEES NASIR – Viral fishing expedition:

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antibiotic resistance bioinformatics databases genomics ontologies publications

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

October 20, 2022 agmcarthur

Alcock et al. 2023. Nucleic Acids Res Oct 20, 2022:gkac920. (online ahead of print) The Comprehensive Antibiotic Resistance Database (CARD; card.mcmaster.ca) combines the Antibiotic Resistance

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COVID19 molecular epidemiology ontologies SARS-CoV-2 software Uncategorized

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

February 13, 2022April 13, 2022 agmcarthur

Emma J. Griffiths et al. Gigascience. 2022 Feb 16;11:giac003. Background: The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is

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antibiotic resistance bioinformatics databases genomics lab members ontologies presentations

ASMNGS 2020 Virtual Conference – 4th ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines

December 10, 2020December 30, 2020 agmcarthur

Aaron Petkau performed his Visual & Automated Disease Analytics Program internship (Univ. of Manitoba) with us during the summer of 2020, creating the CARD:Live graphic

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies

New CARD Team Member!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes new Curator-Developer William Huynh to the Comprehensive Antibiotic Resistance Database staff. Looking forward to pushing CARD forward with William’s help!

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies

Congratulations finishing thesis students!

April 6, 2020December 30, 2020 agmcarthur

COVID19 kept us from celebrating together, but we are very proud of the work you have accomplished! Rachel Tran | Biochem 4T15 – Exploring the

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology ontologies publications

CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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