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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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Biochemistry & Biomedical Sciences Research Symposium 2025

March 30, 2025March 30, 2025 agmcarthur
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IIDR Trainee Day 2024!

November 17, 2024November 17, 2024 agmcarthur

A great day of posters and presentations by the trainees of the Michael G. DeGroote Institute of Infectious Disease Research! Nilasha Mohan, Undergraduate student. Developing

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antibiotic resistance databases ontologies publications

A standardized nomenclature for resistance-modifying agents in the Comprehensive Antibiotic Resistance Database

November 20, 2023November 20, 2023 agmcarthur

Keaton W Smith, Brian P Alcock, Shawn French, Maya A Farha, Amogelang R Raphenya, Eric D Brown, & Andrew G McArthur. Microbiol Spectrum. 2023 Nov

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IIDR Trainee Day 2023

November 13, 2023November 13, 2023 agmcarthur

COLIN BRUCE – Investigating Fibre Degradation in the Infant Gut Microbiota ; DIRK HACKENBERGER – Was World War 2 Foundational to the Antimicrobial Resistance Crisis?

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Congratulations Amogelang Raphenya on the completion of your M.Sc.!

June 16, 2023June 16, 2023 agmcarthur

While many know of Amogelang (Amos) Raphenya as the Lead CARD Developer and a local, national, and international resource for genomic surveillance of antimicrobial resistance,

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antibiotic resistance big data databases genomics ontologies presentations

Biocuration 2023

April 24, 2023May 6, 2023 agmcarthur

Alcock, B.P., A.R. Raphenya, A. Edalatmand, & A.G. McArthur. 2023. The Comprehensive Antibiotic Resistance Database – curating the global resistome. Oral presentation at the 16th

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CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

April 21, 2023April 21, 2023 agmcarthur

Arman Edalatmand & Andrew G McArthur. 2023. Database, doi: 10.1093/database/baad023. Scientific literature is published at a rate that makes manual data extraction a highly time-consuming

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IIDR Trainee Day 2022!

November 16, 2022December 9, 2022 agmcarthur

KARYN MUKIRI – Predicting the total resistome KEATON SMITH – Advancements in curation of the Comprehensive Antibiotic Resistance Database JALEES NASIR – Viral fishing expedition:

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antibiotic resistance bioinformatics databases genomics ontologies publications

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

October 20, 2022 agmcarthur

Alcock et al. 2023. Nucleic Acids Res Oct 20, 2022:gkac920. (online ahead of print) The Comprehensive Antibiotic Resistance Database (CARD; card.mcmaster.ca) combines the Antibiotic Resistance

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Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

February 13, 2022April 13, 2022 agmcarthur

Emma J. Griffiths et al. Gigascience. 2022 Feb 16;11:giac003. Background: The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is

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ASMNGS 2020 Virtual Conference – 4th ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines

December 10, 2020December 30, 2020 agmcarthur

Aaron Petkau performed his Visual & Automated Disease Analytics Program internship (Univ. of Manitoba) with us during the summer of 2020, creating the CARD:Live graphic

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New CARD Team Member!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes new Curator-Developer William Huynh to the Comprehensive Antibiotic Resistance Database staff. Looking forward to pushing CARD forward with William’s help!

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Congratulations finishing thesis students!

April 6, 2020December 30, 2020 agmcarthur

COVID19 kept us from celebrating together, but we are very proud of the work you have accomplished! Rachel Tran | Biochem 4T15 – Exploring the

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CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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AMMI-CACMID: Clostridioides difficile strain divergence over time

April 15, 2019December 30, 2020 agmcarthur

Speicher, D.J., K. Luinstra, J. Maciejewski, K.K. Tsang, A.G. McArthur, & M. Smieja. 2019. Clostridioides difficile strain divergence over time. Oral presentation at the Association of

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Recent Updates to the Comprehensive Antibiotic Resistance Database

March 19, 2019December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca CARD Curation: Expanded MCR, OXA & IMP beta-lactamase, and macrolide phosphotransferase (MPH) sequence curation. Updated nomenclature

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State of the CARD 2019

January 31, 2019December 30, 2020 agmcarthur

A week of lectures, demos, and training for the Comprehensive Antibiotic Resistance Database During McMaster Spring Mid-Term Recess (February 18-24), the McArthur lab is pleased

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Some Recent Funding News…

November 15, 2018December 30, 2020 agmcarthur

Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE). R. Beiko (PI; Dalhousie University), F. Brinkman (co-PI, Simon Fraser University), A.G. McArthur (co-Applicant) + 4 additional co-Applicants.

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New undergraduate students!

September 18, 2018December 30, 2020 agmcarthur

Welcome #TeamVirulence, left to right: Rachel Tran (Biochem 3R06), Sally Min (BiomedDC 4A15), Anatoly Miroshnichencko (BiomedDC 4A15), and Rafik El Werfalli (BiomedDC 4A15), who are

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CAIN, GenEpiO & IRIDA

March 17, 2018December 30, 2020 agmcarthur

The McArthur lab and the Comprehensive Antibiotic Resistance Database are proud to join the Canadian Anti-Infective Innovation Network, International Genomic Epidemiology Application Ontology Consortium, and Integrated Rapid

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