Antibiotics and Resistance: Past, Present, and Future By DIRK L HACKENBERGER, B.Sc. A thesis submitted to the school of graduate studies in partial fulfillment of
Category: software
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Congratulations Dr. Jalees Nasir!
Designing Molecular Fishhooks for Virus Survellance Platforms By JALEES A. NASIR, B.Sc A Thesis Submitted to the School of Graduate Studies in partial fulfilment of
Wlodarski, M.A., T.T.Y. Lau, B.P. Alcock, A.R. Raphenya, F. Maguire, R.G. Beiko, T.E. Ta, & A.G. McArthur. 2025. Unmasking antibiotic resistance genes and their pathogen
Hackenberger et al. Appl Environ Microbiol. 2025 Feb 28:e0187624. Better interrogation of antimicrobial resistance requires new approaches to detect the associated genes in metagenomic samples.
Jon Stokes (left) and graduate student Autumn Arnold (right) are excited to launch the ESKAPE Model, an all-new AI tool designed to help the global
Nasir et al. NAR Genomics & Bioinformatics. 2024 Dec 18;6(4):lqae176. The incorporation of sequencing technologies in frontline and public health healthcare settings was vital in
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IIDR Trainee Day 2024!
A great day of posters and presentations by the trainees of the Michael G. DeGroote Institute of Infectious Disease Research! Nilasha Mohan, Undergraduate student. Developing
Wlodarski, M.A., T.T.Y. Lau, A.R. Raphenya, B.P. Alcock, & A.G. McArthur. 2024. Accurate pathogen-of-origin classification of antibiotic resistance genes with CARD k-mers. Presentation at the
CSM Mukiri, K.M., B.P. Alcock, & A.G. McArthur. 2024. Increasing the predictive accuracy of the Resistance Gene Identifier by abandoning sole reliance on bitscore.
Gill, E.E., B. Jia, C.L. Murall, R. Poujol, M.Z. Anwar, N.S. John, J. Richardsson, A. Hobb, A.S. Olabode, A. Lepsa, A.T. Duggan, A.D. Tyler, A.
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IIDR Trainee Day 2023
COLIN BRUCE – Investigating Fibre Degradation in the Infant Gut Microbiota ; DIRK HACKENBERGER – Was World War 2 Foundational to the Antimicrobial Resistance Crisis?
Baker, S.J.C., J. Maciejewski, M.-T. Usuanlele, J. Gilchrist, D.R. Sharma, D. Bulir, M. Smieja, M. Loeb, M.G. Surette, A.G. McArthur, & D. Mertz. 2023. Investigating
Today the Comprehensive Antibiotic Resistance Database turns 10 years old! While it started a few years before this in the laboratory of Dr. Gerry Wright,
CARD and CZ ID are thrilled to launch a new CZ ID module that allows researchers to detect and analyze antimicrobial resistance (AMR) genes in
The SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL) has been updated to version 1.6.2, with an important hotfix to address software version incompatibility for rules using
Arman Edalatmand & Andrew G McArthur. 2023. Database, doi: 10.1093/database/baad023. Scientific literature is published at a rate that makes manual data extraction a highly time-consuming
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Congratulations Ph.D. student Jalees Nasir!
Congratulations Jalees Nasir on being awarded the Dr. Jordon Page Harshman Bursary! The Dr. Jordan Page Harsham Bursary was established in 2011 by the Harshman
RGI version 6.0.0 – Major release, with parameter and reference data loading changes that may impact scripts. Please see updated README. Added an option (–keep)
antibiotic resistance bioinformatics databases genomics molecular epidemiology publications software
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks
Bertelli et al. Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000818. Outbreaks of virulent and/or drug-resistant bacteria have a significant impact on human health and major economic