Hackenberger, D., H. Imtiaz, A.R Raphenya, B.P Alcock, H.N. Poinar, G.D. Wright, & A.G. McArthur. 2024. CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment. bioRxiv 2024.03.27.587061.

Lu, D., K.L. Kalantar, V.T. Chu, A.L. Glascock, E.S. Guerrero, N. Bernick, X. Butcher, K. Ewing, E. Fahsbender, O. Holmes, E. Hoops, A.E. Jones, R. Lim, S. McCanny, L. Reynoso, K. Rosario, J. Tang, O. Valenzuela, P.M. Mourani, A.J. Pickering, A.R. Raphenya, B.P. Alcock, A.G. McArthur, & C.R. Langelier. 2024. Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline. bioRxiv 2024.04.12.589250.

Mendes, I., E. Griffiths, A. Manuele, D. Fornika, S.H. Tausch, T. Le-Viet, J. Phelan, C.J. Meehan, A.R. Raphenya, B. Alcock, E. Culp, L. Federico, M.S. Haim, A. Witney, A. Black, L. Katz, P. Oluniyi, I. Olawoye, R. Timme, H. Neoh, S.D. Lam, T.Z.M.T. Jamaluddin, S. Nathan, M.Y. Ang, S. Di Gregorio, K. Vandelannoote, R. Dusadeepong, L. Chindelevitch, M.I. Nasar, D. Aanensen, A.O. Afolayan, E.E. Odih, A.G. McArthur, M. Feldgarden, M. Galas, J. Campos, I.N. Okeke, A. Underwood, A.J. Page, D. MacCannell, & F. Maguire. 2024. hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling. bioRxiv, 2024.03.07.583950.

Tsang, K.K., M.M.C. Lam, R.R. Wick, K.L. Wyres, M. Bachman, S. Baker, K. Barry, S. Brisse, S. Campino, A. Chiaverini, D.M. Cirillo, T. Clark, J. Corander, M. Corbella, A. Cornacchia, A. Cuénod, N. D’Alterio, F. Di Marco, P. Donado-Godoy, A. Egli, R. Farzana, E.J. Feil, A. Fostervold, C.L. Gorrie, Y. Gütlin, B. Hassan, M.A.K. Hetland, L.N.M. Hoa, L.T. Hoi, B. Howden, O.O. Ikhimiukor, A.W.J. Jenney, H. Kaspersen, F. Khokhar, T. Leangapichart, M. Ligowska-Marzęta, I..H. Löhr, W. Long, A. Mathers, A.G. McArthur, G. Nagaraj, A.O. Oaikhena, I.N. Okeke, J. Perdigão, H. Parikh, M.H. Pham , F. Pomilio, N. Raffelsberger, A. Rakotondrasoa, K.L.R. Kumar, L. Roberts, C. Rodrigues, Ø. Samuelsen, K. Sands, D. Sassera, H. Seth-Smith, V. Shamanna, N. Sherry, S. Sia, A. Spadar, N. Stoesser, M. Sunde, A. Sundsfjord, P.N. Thach, N. Thomson, H. Thorpe, E. Torok, V.D. Trang, N.V. Trung, J. Vornhagen, T. Walsh, B. Warne, H. Wilson, G.D. Wright, K.E. Holt, & KlebNET AMR Genotype-Phenotype Group. 2024. Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae. bioRxiv, 2024.04.05.587953.

Related Posts