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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies presentations software text mining

IIDR Trainee Day 2025!

November 25, 2025November 25, 2025 agmcarthur
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Congratulations Brian Alcock – 2025 Michael Kamin Hart Award Winner!

November 21, 2025November 25, 2025 agmcarthur

Congratulations Brian Alcock, winner of the 2025 Michael Kamin Hart Award (Staff). This award was created to honour the memory of Michael Kamin Hart, who

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lab members news teaching

Dragon Chess

November 10, 2025 agmcarthur

If you work at the intersection of data science, infectious disease, surveillance, and genomics you often need to think in multiple dimensions. But how do

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antibiotic resistance big data bioinformatics genomics molecular epidemiology presentations software

Public Health Alliance for Genomic Epidemiology Conference

November 3, 2025 agmcarthur

Wlodarski, M.A., T.T.Y. Lau, B.P. Alcock, A.R. Raphenya, T.E. Ta, F. Maguire, R.G. Beiko, & A.G. McArthur. 2025. Unmasking antibiotic resistance genes and their pathogen

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bioinformatics clinical metadata genomics graduation lab members

Congratulations Dr. Colin Bruce!

September 29, 2025September 30, 2025 agmcarthur

Characterizing the Influence of Dietary Fibre Consumption on the Composition and Function of Fibre Fermenting Bacteria in the Infant Gut Microbiome By COLIN Y. BRUCE,

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Undergrads 2025-2026

September 8, 2025September 8, 2025 agmcarthur

Welcome to the McArthur Lab! Thesis & Inquiry Students 2025-2026 Jiaying (Tina) Liu (BIOCHEM 3R06) Lucas Fong (BIOMEDDC 4A15) Melody Ding (BIOCHEM 4Z03) Zahrah Talawala

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antibiotic resistance clinical metadata genomics molecular epidemiology publications

Molecular epidemiology of clinical infections caused by Serratia marcescens complex in a tertiary care hospital system: insights from whole-genome sequencing

August 20, 2025 agmcarthur

Komorowski et al. 2025. Journal of Infectious Diseases, in press. Background: Serratia marcescens is an opportunistic AmpC β-lactamase-producing Enterobacterales associated with intensive care unit outbreaks,

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bioinformatics clinical metadata genomics Mitacs molecular epidemiology publications

Investigating in-hospital transmission of Clostridioides difficile from asymptomatic patients

August 5, 2025 agmcarthur

Baker et al. 2025. Journal of the Association of Medical Microbiology and Infectious Disease Canada, in press. Background: Clostridioides difficile is a bacillus that can

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antibiotic resistance bioinformatics genomics lab members molecular epidemiology presentations software text mining

33rd Conference on Intelligent Systems for Molecular Biology

July 25, 2025July 25, 2025 agmcarthur

Mukiri, K., B. Alcock, A. Raphenya, & A.G. McArthur. 2025. Mind the gap: predicting the total bacterial resistome in the fight against antimicrobial resistance. Poster

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COVID19 publications SARS-CoV-2 virus epidemiology

Early innate immune response and evolution of a SARS-CoV-2 furin cleavage site inactive variant in bat cells

July 2, 2025 agmcarthur

Baid et al. 2015. Cell Reports 44, 115929. SARS-CoV-2 has caused the largest known coronavirus pandemic and is believed to have emerged from insectivorous bats.

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genomics molecular epidemiology publications SARS-CoV-2

Whole-genome sequencing confirms Shigella flexneri infection in a child with shock and suspected multisystem inflammatory syndrome in children: a case report

June 18, 2025 agmcarthur

Baker et al. IDCases. 2025 May 28:40:e02274. Background: Differentiating severe systemic inflammatory syndromes from sepsis can be challenging. The diagnostic process may be further complicated

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awards bioinformatics COVID19 genomics lab members SARS-CoV-2 software virus epidemiology

Dr. Jalees Nasir has been awarded the 2025 HSGSA Impact Award!

May 8, 2025 agmcarthur

It is with great pleasure that we announce that Dr. Jalees Nasir has been awarded the 2025 McMaster Health Sciences Graduate Student Association (HSGSA) Impact

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antibiotic resistance big data bioinformatics databases genomics publications software

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

May 8, 2025 agmcarthur

Lu et al. Genome Med. 2025 May 6;17(1):46. Background: Antimicrobial resistant (AMR) pathogens represent urgent threats to human health, and their surveillance is of paramount

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antibiotic resistance bioinformatics genomics lab members software

Congratulations Dr. Dirk Hackenberger!

April 24, 2025 agmcarthur

Antibiotics and Resistance: Past, Present, and Future By DIRK L HACKENBERGER, B.Sc. A thesis submitted to the school of graduate studies in partial fulfillment of

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bioinformatics COVID19 genomics lab members molecular epidemiology SARS-CoV-2 software virus epidemiology

Congratulations Dr. Jalees Nasir!

April 17, 2025April 17, 2025 agmcarthur

Designing Molecular Fishhooks for Virus Survellance Platforms By JALEES A. NASIR, B.Sc A Thesis Submitted to the School of Graduate Studies in partial fulfilment of

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BDC commercialization industry lab members presentations

Biomedical Discovery & Commercialization (BDC) Engage 2025

April 6, 2025 agmcarthur
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Biochemistry & Biomedical Sciences Research Symposium 2025

March 30, 2025March 30, 2025 agmcarthur
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antibiotic resistance bioinformatics genomics molecular epidemiology presentations software

One Health: Antimicrobial Resistance and Emerging Zoonoses Conference

March 13, 2025March 13, 2025 agmcarthur

Wlodarski, M.A., T.T.Y. Lau, B.P. Alcock, A.R. Raphenya, F. Maguire, R.G. Beiko, T.E. Ta, & A.G. McArthur. 2025. Unmasking antibiotic resistance genes and their pathogen

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antibiotic resistance bioinformatics genomics molecular epidemiology publications software

CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment

February 28, 2025February 28, 2025 agmcarthur

Hackenberger et al. Appl Environ Microbiol. 2025 Feb 28:e0187624. Better interrogation of antimicrobial resistance requires new approaches to detect the associated genes in metagenomic samples.

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antibiotic resistance big data bioinformatics genomics lab members molecular epidemiology

Post-Doc Update

February 16, 2025February 26, 2025 agmcarthur

Two alumni of the McMaster Biochemistry graduate program have joined the McArthur Lab! Dr. Emily Bordeleau got her PhD from McMaster in 2022 under the

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