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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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The Dataharmonizer: a Tool for Faster Data Harmonization, Validation, Aggregation, and Analysis of Pathogen Genomics Contextual Information

June 24, 2022June 24, 2022 agmcarthur

Gill et al. 2022. Preprints 10.20944/preprints202206.0335.v1 Pathogen genomics is a critical tool for public health surveillance, infection control, outbreak investigations, as well as research. In

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Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing

June 15, 2022June 15, 2022 agmcarthur

Raphenya et al. Scientific Data volume 9, Article number: 341 (2022). Whole genome sequencing (WGS) is a key tool in identifying and characterising disease-associated bacteria

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Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective

May 26, 2022May 26, 2022 agmcarthur

Kim et al. Clin Microbiol Rev. 2022 May 25;e0017921. Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern medicine.

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Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents

April 13, 2022 agmcarthur

Sanderson et al. 2022. bioRxiv 10.1101/2022.04.11.487771. Enterococcus faecium is a ubiquitous opportunistic pathogen that is exhibiting increasing levels of antimicrobial resistance (AMR). Many of the

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Arman Edalatmand wins a MacData Fellowship!

March 30, 2021May 4, 2021 agmcarthur

Arman Edalatmand has been awarded a 2021 MacData Fellowship from McMaster’s MacData Institute. Working with co-supervisors Drs. Andrew McArthur (Biochemistry & Biomedical Sciences) and Victor

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Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance

January 8, 2021January 8, 2021 agmcarthur

Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, & Andrew G. McArthur Microbial Genomics, in

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McArthur Lab & McMaster contribute to global genomic surveillance of SARS-CoV-2

October 21, 2020December 30, 2020 agmcarthur

 

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Genotyping SARS-CoV-2 through an interactive web application

June 14, 2020December 30, 2020 agmcarthur

Maan, H., H. Mbareche, A.R. Raphenya, A. Banerjee, J.A. Nasir, R.A. Kozak, N. Knox, S. Mubareka, A.G. McArthur, & B. Wang. The Lancet Digital Health,

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CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance

August 19, 2019December 30, 2020 agmcarthur

Waglechner N, McArthur AG, Wright GD. Nat Microbiol. 2019 Aug 12. [Epub ahead of print] Glycopeptide antibiotics are produced by Actinobacteria through biosynthetic gene clusters

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