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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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WISE CREST, Ontario Biology Day, BBS Research Symposium 2021

March 24, 2021March 25, 2021 agmcarthur

McMaster Biochemistry & Biomedical Sciences Research Symposium Edalatmand. A. & A.G. McArthur. 2021. Ontology-driven method of contextualizing antimicrobial resistance determinants. Poster presentation at the McMaster

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COVID19 molecular epidemiology outreach publications SARS-CoV-2 virus epidemiology

OpEd: SARS-CoV-2 variants of concern remind us that we underestimate biology at our own peril

March 16, 2021March 16, 2021 agmcarthur

Imagine a tiny molecular machine armed with a program to infect human cells, subvert their defenses and make copies of itself to infect neighboring cells

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Welcome Sheridan Baker

February 4, 2021May 4, 2021 agmcarthur

As part of our continuing efforts on genomic surveillance of SARS-CoV-2 variants for CanCOGeN, the McArthur lab welcomes Sheridan Baker, who will be doing the

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bioinformatics COVID19 epidemiology genomics molecular epidemiology SARS-CoV-2 virus epidemiology

Genomic Epidemiology of SARS-CoV-2: Canada & Ontario

January 15, 2021January 15, 2021 agmcarthur

In collaboration with our colleague Dr. Finlay Maguire (Dalhousie University) and as part of our ongoing work for Ontario’s COVID-19 Genomics Rapid Response Coalition and the Canadian

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IIDR Trainee Day 2020! Forging the Future of Infectious Disease Research

November 11, 2020December 30, 2020 agmcarthur

Nasir, J.A et al. 2020. SIGNALing the Need for Surveillance: A Comparison of Whole Genome Sequencing Methods for SARS-CoV-2. Edalatmand, A. & A.G. McArthur. 2020.

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McArthur Lab & McMaster contribute to global genomic surveillance of SARS-CoV-2

October 21, 2020December 30, 2020 agmcarthur

 

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COVID19 publications SARS-CoV-2 virus epidemiology

Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus

September 9, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Andrew C Doxey, Benjamin J-M Tremblay, Michael J Mansfield, Sonu Subudhi, Jeremy A Hirota, Matthew S Miller, Andrew G McArthur, Samira Mubareka, &

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A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

August 18, 2020December 30, 2020 agmcarthur

Jalees A. Nasir, Robert A. Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, Muhannad Alruwaili, Arinjay Banerjee, Hamza Mbareche, Brian

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Preprint: The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

August 8, 2020December 30, 2020 agmcarthur

Emma J. Griffiths, Ruth E. Timme, Andrew J. Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Catarina Inês Mendes, Simon H. Tausch, Allison Black, Thomas R.

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genomics publications virus epidemiology

The origins and genomic diversity of American Civil War Era smallpox vaccine strains

July 20, 2020December 30, 2020 agmcarthur

Ana T Duggan, Jennifer Klunk, Ashleigh F Porter, Anna N Dhody, Robert Hicks, Geoffrey L Smith, Margaret Humphreys, Andrea M McCollum, Whitni B Davidson, Kimberly

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COVID19 molecular epidemiology publications SARS-CoV-2 virulence virus epidemiology

Preprint: Early temporal dynamics of cellular responses to SARS-CoV-2

June 30, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Patrick Budylowski, Daniel Richard, Hassaan Maan, Jennifer A. Aguiar, Nader El-Sayes, Michael R. D’Agostino, Benjamin J.-M. Tremblay, Sam Afkhami, Mehran Karimzadeh, Lily Yip,

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Genotyping SARS-CoV-2 through an interactive web application

June 14, 2020December 30, 2020 agmcarthur

Maan, H., H. Mbareche, A.R. Raphenya, A. Banerjee, J.A. Nasir, R.A. Kozak, N. Knox, S. Mubareka, A.G. McArthur, & B. Wang. The Lancet Digital Health,

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SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL)

May 29, 2020December 30, 2020 agmcarthur

Thanks to hard work by Jalees Nasir, Amos Raphenya, Dr. Kendrick Smith (Perimeter Institute), and Dr. Finlay Maguire (Dalhousie) with help from our Ontario Coronavirus

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Welcome Ahmed Draia!

May 29, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes Ahmed Draia for an internship placement as part of McMaster’s Masters of Biomedical Discovery & Commercialization (MBDC) program. Reflective of his

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COVID19 genomics SARS-CoV-2 virus epidemiology

Preprint: Isolation, sequence, infectivity and replication kinetics of SARS-CoV-2

April 14, 2020December 30, 2020 agmcarthur

Banerjee, A., J.A. Nasir, P. Budylowski, L. Yip, P. Aftanas, N. Christie, A. Ghalami, K. Baid, A.R. Raphenya, J.A. Hirota, M.S. Miller, A.J. McGeer, M.A.

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COVID19 genomics SARS-CoV-2 virus epidemiology

Innovation at McMaster University During the COVID-19 Crisis

April 9, 2020December 30, 2020 agmcarthur

Drs. Andrew McArthur & Arinjay Banerjee giving the background story on isolation of the live SARS-CoV-2 virus in Canada.

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McArthur Lab & CARD during SARS-CoV-2

March 23, 2020December 30, 2020 agmcarthur

Quick update on the status of the McArthur Lab and the Comprehensive Antibiotic Resistance Database. While our home institution McMaster University is closed to on-site

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