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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics genomics publications

Performance characteristics of next-generation sequencing for the detection of antimicrobial resistance determinants in Escherichia coli genomes and metagenomes

June 1, 2022June 2, 2022 agmcarthur

Rooney et al. 2022 Jun 1;e0002222. Short-read sequencing can provide detection of multiple genomic determinants of antimicrobial resistance from single bacterial genomes and metagenomic samples.

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Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks

May 19, 2022 agmcarthur

Bertelli et al. Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000818. Outbreaks of virulent and/or drug-resistant bacteria have a significant impact on human health and major economic

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Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents

April 13, 2022 agmcarthur

Sanderson et al. 2022. bioRxiv 10.1101/2022.04.11.487771. Enterococcus faecium is a ubiquitous opportunistic pathogen that is exhibiting increasing levels of antimicrobial resistance (AMR). Many of the

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Biochemistry & Biomedical Sciences Research Symposium (BBSRS) 2022!

March 2, 2022March 2, 2022 agmcarthur

Karyn Mukiri – Predicting the Total Resistome Mugdha Dave – Creation and standardization of automated bacterial pathogen genomic sequencing reporting through informatics

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Welcome Madeline McCarthy!

January 4, 2022 agmcarthur

The McArthur lab welcomes Madeline McCarthy, a recent MSc graduate of VIDO / USask, as she join us for her PhD studies in the McMaster

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Jalees Nasir awarded 2021 Fred & Helen Knight Enrichment Award!

July 14, 2021July 14, 2021 agmcarthur

Congratulations to PhD student Jalees Nasir, who has been awarded the prestigious 2021 Fred & Helen Knight Enrichment Award, which recognizes exceptional promise in early

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antibiotic resistance bioinformatics genomics lab members presentations

Summer Conferences 2021

July 5, 2021July 5, 2021 agmcarthur

All online this year due to COVID-19, but some great presentations and virtual posters by our trainees and collaborators! Edalatmand, A. & A.G. McArthur. 2021.

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antibiotic resistance bioinformatics genomics publications

Performance characteristics of next-generation sequencing for antimicrobial resistance gene detection in genomes and metagenomes

June 29, 2021June 29, 2021 agmcarthur

Ashley M. Rooney, Amogelang R. Raphenya, Roberto G. Melano, Christine Seah, Noelle R. Yee, Derek R. MacFadden, Andrew G. McArthur, Pierre H.H. Schneeberger, Bryan Coburn.

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bioinformatics ecotoxicogenomics P450 phylogenetics publications

The cytochrome P450 (CYP) superfamily in cnidarians

May 11, 2021 agmcarthur

Pankov, K.V., A.G. McArthur, D.A. Gold, D.R. Nelson, J.V. Goldstone, J.Y. Wilson. Scientific Reports. 2021 May 10;11(1):9834. The cytochrome P450 (CYP) superfamily is a diverse

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Genomic Epidemiology of SARS-CoV-2: Canada & Ontario

January 15, 2021January 15, 2021 agmcarthur

In collaboration with our colleague Dr. Finlay MaguireĀ (Dalhousie University) and as part of our ongoing work forĀ Ontario’s COVID-19 Genomics Rapid Response Coalition and the Canadian

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