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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 molecular epidemiology ontologies SARS-CoV-2 software Uncategorized

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

February 13, 2022April 13, 2022 agmcarthur

Emma J. Griffiths et al. Gigascience. 2022 Feb 16;11:giac003. Background: The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is

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COVID19 publications teaching

A survey on Canadian pediatric hospital clinical/medical teaching unit implementation during the first and second wave of the COVID-19 pandemic

November 11, 2021 agmcarthur

Kara K Tsang, Andrew Latchman, Nishma Singhal, Giuliana Federici, Sandra Russell, Denise Irwin, Robyn Stevens, Andrew G McArthur, & Sarah Khan BMC Med Educ. 2021

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awards COVID19 epidemiology genomics IIDR lab members molecular epidemiology SARS-CoV-2 virus epidemiology

Emily Panousis wins the Michael Kamin Hart Memorial Undergraduate Scholarship for her work on SARS-CoV-2 surveillance!

November 3, 2021November 5, 2021 agmcarthur

More information about IIDR Trainee Day and Michael Kamin Hart here.

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COVID19 publications SARS-CoV-2 virus epidemiology

Evolutionary trajectory of SARS-CoV-2 and emerging variants

August 23, 2021August 27, 2021 agmcarthur

Jalen Singh, Pranav Pandit, Andrew G McArthur, Arinjay Banerjee, Karen Mossman Virology Journal. 2021 Aug 13;18(1):166. The emergence of a novel coronavirus, severe acute respiratory

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COVID19 publications SARS-CoV-2 virus epidemiology

Surface and air contamination with SARS-CoV-2 from hospitalized COVID-19 patients in Toronto, Canada

May 26, 2021May 26, 2021 agmcarthur

Kotwa et al. 2021. medRxiv https://doi.org/10.1101/2021.05.17.21257122 Background: The aim of this prospective cohort study was to determine the burden of SARS-CoV-2 in air and on

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COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Temporal dynamics and evolution of SARS-CoV-2 demonstrate the necessity of ongoing viral genome sequencing in Ontario, Canada

May 8, 2021May 8, 2021 agmcarthur

Sjaarda, C.P., J.L. Guthrie, S. Mubareka, J.T. Simpson, B. Hamelin, H. Wong, L. Mortimer, R. Slinger, A.G. McArthur, M. Desjardins, K. Douchant, Ontario’s COVID-19 Genomics

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COVID19 publications SARS-CoV-2

Experimental and natural evidence of SARS-CoV-2 infection-induced activation of type I interferon responses

May 4, 2021 agmcarthur

Banerjee, A., N. El-Sayes, P. Budylowski, D. Richard, H. Maan, J. Aguiar, K. Baid, M. D’Agostino, J. Ang, B. Tremblay, S. Afkhami, M. Karimzadeh, A.

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awards COVID19 IIDR lab members molecular epidemiology SARS-CoV-2 software virus epidemiology

Congratulations to the 2021 DBCAD & IIDR Undergraduate Summer Student Fellowship recipients!

May 4, 2021 agmcarthur

Congratulations Emily Panousis on being awarded a 2021 IIDR Summer Student Fellowship! For nine years now, these awards have supported trainees working in IIDR and

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antibiotic resistance awards COVID19 lab members molecular epidemiology presentations SARS-CoV-2 virus epidemiology

WISE CREST, Ontario Biology Day, BBS Research Symposium 2021

March 24, 2021March 25, 2021 agmcarthur

McMaster Biochemistry & Biomedical Sciences Research Symposium Edalatmand. A. & A.G. McArthur. 2021. Ontology-driven method of contextualizing antimicrobial resistance determinants. Poster presentation at the McMaster

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COVID19 molecular epidemiology outreach publications SARS-CoV-2 virus epidemiology

OpEd: SARS-CoV-2 variants of concern remind us that we underestimate biology at our own peril

March 16, 2021March 16, 2021 agmcarthur

Imagine a tiny molecular machine armed with a program to infect human cells, subvert their defenses and make copies of itself to infect neighboring cells

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