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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 molecular epidemiology ontologies SARS-CoV-2 software Uncategorized

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

February 13, 2022April 13, 2022 agmcarthur

Emma J. Griffiths et al. Gigascience. 2022 Feb 16;11:giac003. Background: The Public Health Alliance for Genomic Epidemiology (PHA4GE) (https://pha4ge.org) is a global coalition that is

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awards lab members news

Congratulations Brian Alcock!

January 27, 2022February 10, 2022 agmcarthur

Brian Alcock has received a Gradaute Student Association Award for Contributions by Non-Academic Staff! Brian works as CARD’s Lead Curator but also has trained countless

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antibiotic resistance bioinformatics genomics IIDR lab members molecular epidemiology

Welcome Madeline McCarthy!

January 4, 2022 agmcarthur

The McArthur lab welcomes Madeline McCarthy, a recent MSc graduate of VIDO / USask, as she join us for her PhD studies in the McMaster

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COVID19 publications teaching

A survey on Canadian pediatric hospital clinical/medical teaching unit implementation during the first and second wave of the COVID-19 pandemic

November 11, 2021 agmcarthur

Kara K Tsang, Andrew Latchman, Nishma Singhal, Giuliana Federici, Sandra Russell, Denise Irwin, Robyn Stevens, Andrew G McArthur, & Sarah Khan BMC Med Educ. 2021

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awards COVID19 epidemiology genomics IIDR lab members molecular epidemiology SARS-CoV-2 virus epidemiology

Emily Panousis wins the Michael Kamin Hart Memorial Undergraduate Scholarship for her work on SARS-CoV-2 surveillance!

November 3, 2021November 5, 2021 agmcarthur

More information about IIDR Trainee Day and Michael Kamin Hart here.

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lab members

Thesis Students!

September 7, 2021August 24, 2021 agmcarthur

September is here and that means new undergraduate thesis students! Emily Panousis & Gene Liang will start their COVID-19 delayed undergraduate thesis, joined by summer

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lab members news

New Graduate Students & Postdocs!

September 7, 2021August 24, 2021 agmcarthur

Two current lab members are changing their roles, with Mugdha Dave starting her MSc studies and Dr. Sheridan Baker transitioning from CanCOGeN work to a

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antibiotic resistance databases genomics lab members news

Farewell William!

August 31, 2021August 24, 2021 agmcarthur

Today we say goodbye to William Huynh, who first joined us as an undergraduate thesis student and then stayed on to work as the Comprehensive

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publications

The pesticide chlorpyrifos promotes obesity by inhibiting diet-induced thermogenesis in brown adipose tissue

August 27, 2021August 27, 2021 agmcarthur

Wang, B., E.E. Tsakiridis, S. Zhang, A. Llanos, E.M. Desjardins, J.M. Yabut, A.E. Green, E.A. Day, B.K. Smith, J.S.V. Lally, J. Wu, A.R. Raphenya, K.A.

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COVID19 publications SARS-CoV-2 virus epidemiology

Evolutionary trajectory of SARS-CoV-2 and emerging variants

August 23, 2021August 27, 2021 agmcarthur

Jalen Singh, Pranav Pandit, Andrew G McArthur, Arinjay Banerjee, Karen Mossman Virology Journal. 2021 Aug 13;18(1):166. The emergence of a novel coronavirus, severe acute respiratory

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awards bioinformatics epidemiology genomics IIDR lab members news SARS-CoV-2 software virus epidemiology

Jalees Nasir awarded 2021 Fred & Helen Knight Enrichment Award!

July 14, 2021July 14, 2021 agmcarthur

Congratulations to PhD student Jalees Nasir, who has been awarded the prestigious 2021 Fred & Helen Knight Enrichment Award, which recognizes exceptional promise in early

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antibiotic resistance genomics lab members

Congratulations Kara Tsang on the completion of your Ph.D.!

July 9, 2021July 9, 2021 agmcarthur
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antibiotic resistance bioinformatics genomics lab members presentations

Summer Conferences 2021

July 5, 2021July 5, 2021 agmcarthur

All online this year due to COVID-19, but some great presentations and virtual posters by our trainees and collaborators! Edalatmand, A. & A.G. McArthur. 2021.

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antibiotic resistance bioinformatics genomics publications

Performance characteristics of next-generation sequencing for antimicrobial resistance gene detection in genomes and metagenomes

June 29, 2021June 29, 2021 agmcarthur

Ashley M. Rooney, Amogelang R. Raphenya, Roberto G. Melano, Christine Seah, Noelle R. Yee, Derek R. MacFadden, Andrew G. McArthur, Pierre H.H. Schneeberger, Bryan Coburn.

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COVID19 publications SARS-CoV-2 virus epidemiology

Surface and air contamination with SARS-CoV-2 from hospitalized COVID-19 patients in Toronto, Canada

May 26, 2021May 26, 2021 agmcarthur

Kotwa et al. 2021. medRxiv https://doi.org/10.1101/2021.05.17.21257122 Background: The aim of this prospective cohort study was to determine the burden of SARS-CoV-2 in air and on

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bioinformatics ecotoxicogenomics P450 phylogenetics publications

The cytochrome P450 (CYP) superfamily in cnidarians

May 11, 2021 agmcarthur

Pankov, K.V., A.G. McArthur, D.A. Gold, D.R. Nelson, J.V. Goldstone, J.Y. Wilson. Scientific Reports. 2021 May 10;11(1):9834. The cytochrome P450 (CYP) superfamily is a diverse

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COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Temporal dynamics and evolution of SARS-CoV-2 demonstrate the necessity of ongoing viral genome sequencing in Ontario, Canada

May 8, 2021May 8, 2021 agmcarthur

Sjaarda, C.P., J.L. Guthrie, S. Mubareka, J.T. Simpson, B. Hamelin, H. Wong, L. Mortimer, R. Slinger, A.G. McArthur, M. Desjardins, K. Douchant, Ontario’s COVID-19 Genomics

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COVID19 publications SARS-CoV-2

Experimental and natural evidence of SARS-CoV-2 infection-induced activation of type I interferon responses

May 4, 2021 agmcarthur

Banerjee, A., N. El-Sayes, P. Budylowski, D. Richard, H. Maan, J. Aguiar, K. Baid, M. D’Agostino, J. Ang, B. Tremblay, S. Afkhami, M. Karimzadeh, A.

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awards COVID19 IIDR lab members molecular epidemiology SARS-CoV-2 software virus epidemiology

Congratulations to the 2021 DBCAD & IIDR Undergraduate Summer Student Fellowship recipients!

May 4, 2021 agmcarthur

Congratulations Emily Panousis on being awarded a 2021 IIDR Summer Student Fellowship! For nine years now, these awards have supported trainees working in IIDR and

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lab members

Welcome Mugdha Dave & Mateusz Wlodarski!

May 1, 2021May 4, 2021 agmcarthur

The McArthur lab welcomes Mugdha Dave (HBSc Biomedical Discovery & Commercialization, 2021) and Mateusz Wlodarski (4th year BHSc Biochemistry & Biomedical Sciences student) as 2021

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