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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies

New CARD Team Member!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes new Curator-Developer William Huynh to the Comprehensive Antibiotic Resistance Database staff. Looking forward to pushing CARD forward with William’s help!

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COVID19 genomics

Ongoing SARS-CoV-2 Efforts

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab is honoured to collaborate with our clinical colleagues across Ontario in sequencing of SARS-CoV-2 clinical isolates, to better understand the epidemiology of

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antibiotic resistance bioinformatics genomics lab members

Summer students!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes back summer students Rachel Tran & Arman Edalatmand plus first timers Marcel Jansen & Emily Panousis! These four will be covering

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antibiotic resistance genomics lab members molecular epidemiology

New PhD Student!

April 27, 2020December 30, 2020 agmcarthur

Welcome Ashraf Bazan, who has joined the lab and the McMaster Biochemistry & Biomedical Sciences graduate program! A familiar face in the IIDR as he started

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COVID19 genomics SARS-CoV-2 virus epidemiology

Preprint: Isolation, sequence, infectivity and replication kinetics of SARS-CoV-2

April 14, 2020December 30, 2020 agmcarthur

Banerjee, A., J.A. Nasir, P. Budylowski, L. Yip, P. Aftanas, N. Christie, A. Ghalami, K. Baid, A.R. Raphenya, J.A. Hirota, M.S. Miller, A.J. McGeer, M.A.

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COVID19 genomics SARS-CoV-2 virus epidemiology

Innovation at McMaster University During the COVID-19 Crisis

April 9, 2020December 30, 2020 agmcarthur

Drs. Andrew McArthur & Arinjay Banerjee giving the background story on isolation of the live SARS-CoV-2 virus in Canada.

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies

Congratulations finishing thesis students!

April 6, 2020December 30, 2020 agmcarthur

COVID19 kept us from celebrating together, but we are very proud of the work you have accomplished! Rachel Tran | Biochem 4T15 – Exploring the

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antibiotic resistance COVID19 epidemiology genomics lab members molecular epidemiology news SARS-CoV-2 virus epidemiology

McArthur Lab & CARD during SARS-CoV-2

March 23, 2020December 30, 2020 agmcarthur

Quick update on the status of the McArthur Lab and the Comprehensive Antibiotic Resistance Database. While our home institution McMaster University is closed to on-site

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Preprint: Rapid design of a bait capture platform for culture- and amplification-free next-generation sequencing of SARS-CoV-2

February 26, 2020December 30, 2020 agmcarthur

Nasir, J.A., D.J. Speicher, R.A. Kozak, H.N. Poinar, M.S. Miller, & A.G. McArthur. Preprints 2020, 2020020385. SARS-CoV-2 is a novel betacoronavirus and the aetiological agent

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CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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antibiotic resistance genomics publications

Capturing the Resistome: A targeted capture method to reveal antibiotic resistance determinants in metagenomes

October 16, 2019December 30, 2020 agmcarthur

Guitor AK, Raphenya AR, Klunk J, Kuch M, Alcock B, Surette MG, McArthur AG, Poinar HN, Wright GD. Editor’s Pick! Antimicrobial Agents and Chemotherapy 2019 Oct

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antibiotic resistance big data bioinformatics genomics IIDR publications

Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance

August 19, 2019December 30, 2020 agmcarthur

Waglechner N, McArthur AG, Wright GD. Nat Microbiol. 2019 Aug 12. [Epub ahead of print] Glycopeptide antibiotics are produced by Actinobacteria through biosynthetic gene clusters

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antibiotic resistance genomics

Some Recent Funding News…

June 6, 2019January 8, 2021 agmcarthur

Empowering conventional antibiotics with new drug leads targeting the outer-membrane of Gram-negative pathogens. E. Brown (PI), G.D. Wright (co-I), B. Coombes (co-I), A.G. McArthur (co-I),

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MacData Summer School 2019

May 31, 2019December 30, 2020 agmcarthur

Dr. McArthur and PhD student Kara Tsang taught together at the 2019 MacData Institute Summer School, with Dr. McArthur reviewing biocuration and bioinformatics for genomic

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antibiotic resistance bioinformatics genomics molecular epidemiology software

RGI 5 Released!

March 26, 2019December 30, 2020 agmcarthur

April 2019 big #card_release #RGI5! Resistance Gene Identifier Version 5: entirely new algorithms for metagenomics data, new options for genomes & assemblies. Extensively updated documentation,

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antibiotic resistance bioinformatics databases genomics IIDR molecular epidemiology ontologies presentations software teaching

State of the CARD 2019

January 31, 2019December 30, 2020 agmcarthur

A week of lectures, demos, and training for the Comprehensive Antibiotic Resistance Database During McMaster Spring Mid-Term Recess (February 18-24), the McArthur lab is pleased

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antibiotic resistance bioinformatics databases genomics ontologies

Some Recent Funding News…

November 15, 2018December 30, 2020 agmcarthur

Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE). R. Beiko (PI; Dalhousie University), F. Brinkman (co-PI, Simon Fraser University), A.G. McArthur (co-Applicant) + 4 additional co-Applicants.

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antibiotic resistance databases genomics molecular epidemiology presentations

Reunião de Citogenética do Brasil Central & XII Workshop de Genética da PUC Goiás

October 17, 2018December 30, 2020 agmcarthur

Some invitations are more special than others. Dr. Peixoto da Cruz and I went to graduate school together in British Columbia (a long time ago!)

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Kara Tsang wins Canadian Society of Microbiologists 2018 Top Student Oral Presentation Award!

June 22, 2018December 30, 2020 agmcarthur

Tsang, K.K., H. Zubyk, S. Chou, G.D. Wright, & A.G. McArthur. Decoding bad bags: Predicting antibiotic resistance phenotypes from genotype. Oral presentation at the Canadian Society of

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antibiotic resistance bioinformatics databases genomics lab members presentations twitter

68th Annual Canadian Society of Microbiologist Conference in Tweets

June 22, 2018December 30, 2020 agmcarthur

Alcock, B., A.R. Raphenya, A.N. Sharma, K.K. Tsang, T.T.Y. Lau, A. Hernandez-Koutoucheva, & A.G. McArthur. 2018. Data and curation in the Comprehensive Antibiotic Resistance Database.

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