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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics databases genomics lab members

Kara Tsang, Ph.D. Student

June 11, 2018December 30, 2020 agmcarthur

Kara Tsang passed her graduate transfer exam today, officially moving from the McMaster Biochemistry & Biomedical Sciences Masters program to the Ph.D. program. Kara’s work

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antibiotic resistance awards bioinformatics genomics IIDR lab members

Tammy Lau awarded a 2018 IIDR Summer Student Fellowship

May 11, 2018December 30, 2020 agmcarthur

Tammy Lau has been awarded a prestigious Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Summer Student Fellowship for her work on development of k-mer approaches

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology news software

Recent Updates to the Comprehensive Antibiotic Resistance Database

April 16, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca CARD Curation: Addition of HERA, TRU, & ACI beta-lactamases, sul4, and new quinolone efflux pumps. Antibiotic

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bioinformatics epidemiology genomics

Some Funding News…

March 17, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database: Expanded tools for molecular surveillance of antimicrobial resistance (AMR) in the environment, agriculture, and clinic. A.G. McArthur (PI), G. Van

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CAIN, GenEpiO & IRIDA

March 17, 2018December 30, 2020 agmcarthur

The McArthur lab and the Comprehensive Antibiotic Resistance Database are proud to join the Canadian Anti-Infective Innovation Network, International Genomic Epidemiology Application Ontology Consortium, and Integrated Rapid

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology news software

Major Update of the Comprehensive Antibiotic Resistance Database

February 2, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca This February 2018 release is our largest to date and includes new data types, a new

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antibiotic resistance bioinformatics genomics lab members software

Tammy Lau – Advancing the Resistance Gene Identifier

September 6, 2017December 30, 2020 agmcarthur

Building upon her successful Biochem 3A03 project, Tammy Lau is staying in the lab for 2017-2018 as part of her Biochem 4T15 Research Thesis. Tammy’s

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antibiotic resistance genomics publications

A diverse intrinsic antibiotic resistome from a cave bacterium

December 8, 2016December 30, 2020 agmcarthur

Pawlowski AC, Wang W, Koteva K, Barton HA, McArthur AG, & Wright GD. Nat Commun. 2016 Dec 8;7:13803. Antibiotic resistance is ancient and widespread in

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antibiotic resistance big data bioinformatics databases epidemiology genomics news

Government of Canada invests in new genomics “big data” research projects aimed at real-world challenges

September 13, 2016December 30, 2020 agmcarthur

A cross-national research consortia co-led by McMaster’s Andrew McArthur is receiving two of 16 federal grants to further develop a big data solution to the

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antibiotic resistance bioinformatics databases epidemiology genomics presentations

2nd Conference Rapid Microbial NGS and Bioinformatics: Translation Into Practice

June 14, 2016December 31, 2020 agmcarthur

McArthur, A.G., B. Jia, A.R. Raphenya, P. Guo, K. Tsang, B. Dave, B. Alcock, B. Lago, N. Waglechner, & G.D. Wright. 2016. The Comprehensive Antibiotic Resistance

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antibiotic resistance BDC bioinformatics epidemiology genomics lab members presentations

BDC Engage 2016!

April 6, 2016December 31, 2020 agmcarthur

Congratulations to Kara Tsang and Zachary Lin on completion of their Biomedical Discovery and Commercialization (BDC) 4A15 thesis research! Both Kara & Zachary presented their research

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antibiotic resistance big data bioinformatics epidemiology genomics presentations YouTube

Big Ideas Better Cities – Health and Social Innovation through Big Data – Full Video

January 12, 2016December 31, 2020 agmcarthur

Combatting Antibiotic Resistance Using Surveillance – click on the image to watch the 10 minute video. More details here.

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antibiotic resistance BDC bioinformatics databases epidemiology Galaxy genomics lab members presentations

The Inaugural Biomedical Discovery & Commercialization (BDC) Symposium

November 26, 2015December 31, 2020 agmcarthur

Zachary Lin – Adapting Galaxy bioinformatics to outbreak-associated Clostridium difficile The completion of the human genome project in 2001 sparked the beginning of a sequencing revolution

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bioinformatics ecotoxicogenomics genomics news

Role of nuclear factor, erythroid 2 (Nfe2) in the oxidative stress response during development

October 29, 2015December 31, 2020 agmcarthur

A new NIH-funded collaboration with Dr. Larissa Williams, Bates College, USA that applies transcriptomic approaches to examination of the role Nfe2 in oxidative stress response during

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antibiotic resistance bioinformatics databases epidemiology genomics IIDR lab members presentations

IIDR Trainee Day 2015!

October 25, 2015December 31, 2020 agmcarthur

http://traineeday2015.mcmasteriidr.ca

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antibiotic resistance epidemiology genomes genomics publications

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

October 21, 2015December 31, 2020 agmcarthur

Authors: Freschi et al. Front Microbiol. 2015 Sep 29;6:1036. The International Pseudomonas aeruginosa Consortium is sequencing over 1000 genomes and building an analysis pipeline for the study

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genomics population genomics publications

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

October 13, 2015December 31, 2020 agmcarthur

Authors: Graham CF, Glenn TC, McArthur AG, Boreham DR, Kieran T, Lance S, Manzon RG, Martino JA, Pierson T, Rogers SM, Wilson JY, Somers CM. Mol Ecol

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genomics kinesiology McMaster news

‘Omic’ Responses & Inactivity in Aging

July 26, 2015December 31, 2020 agmcarthur

The McArthur lab is proud to collaborate with colleagues in the Faculty of Science on the metabolic and transcriptional responses to human inactivity and aging under

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