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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance big data databases genomics ontologies presentations

Biocuration 2023

April 24, 2023May 6, 2023 agmcarthur

Alcock, B.P., A.R. Raphenya, A. Edalatmand, & A.G. McArthur. 2023. The Comprehensive Antibiotic Resistance Database – curating the global resistome. Oral presentation at the 16th

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CBW & VTEC 2023

April 18, 2023May 6, 2023 agmcarthur

They’re back! Thanks to Karyn Mukiri, Jalees Nasir, and Madeline McCarthy for serving as Teaching Assistants for the re-booted Canadian Bioinformatics Workshop in Infectious Disease

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BDC genomics lab members molecular epidemiology

Congratulations Nisha Tailor & Fatimah Jessa, 2022-2023 Thesis Students!

April 15, 2023April 15, 2023 agmcarthur

Nisha & Fatimah completed the year with their Biomedical Discovery & Commercialization thesis presentations on Shigella bait capture and resistome software accuracy, respectively. Great work

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genomics lab members Mitacs molecular epidemiology presentations SARS-CoV-2 virus epidemiology

33rd European Congress of Clinical Microbiology & Infectious Diseases

April 15, 2023May 6, 2023 agmcarthur

Baker, S.J.C., J. Maciejewski, M.-T. Usuanlele, J. Gilchrist, D.R. Sharma, D. Bulir, M. Smieja, M. Loeb, M.G. Surette, AG. McArthur, & D. Mertz. 2023. Investigating

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Congratulations Ph.D. student Jalees Nasir!

February 24, 2023February 24, 2023 agmcarthur

Congratulations Jalees Nasir on being awarded the Dr. Jordon Page Harshman Bursary! The Dr. Jordan Page Harsham Bursary was established in 2011 by the Harshman

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awards COVID19 genomics lab members Mitacs molecular epidemiology SARS-CoV-2

Congratulations Dr. Sheridan Baker – Mitacs Elevate Postdoctoral Fellowship

February 9, 2023March 3, 2023 agmcarthur

Congratulations Dr. Sheridan Baker on being awarded a 2-year Mitacs Elevate Postdoctoral Fellowship, which will allow him to train jointly in clinical epidemiology, molecular epidemiology,

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antibiotic resistance bioinformatics databases genomics lab members

Team Meta-Model Volunteers

January 10, 2023January 10, 2023 agmcarthur

The McArthur Lab welcomes Team Meta-Model, a volunteer curation team led by former BioPharm Co-Op Keaton Smith, working on curating and upgrading the Comprehensive Antibiotic

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antibiotic resistance awards bioinformatics Co-Op positions databases epidemiology genomics IIDR lab members ontologies presentations

IIDR Trainee Day 2022!

November 16, 2022December 9, 2022 agmcarthur

KARYN MUKIRI – Predicting the total resistome KEATON SMITH – Advancements in curation of the Comprehensive Antibiotic Resistance Database JALEES NASIR – Viral fishing expedition:

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antibiotic resistance bioinformatics databases genomics ontologies publications

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

October 20, 2022 agmcarthur

Alcock et al. 2023. Nucleic Acids Res Oct 20, 2022:gkac920. (online ahead of print) The Comprehensive Antibiotic Resistance Database (CARD; card.mcmaster.ca) combines the Antibiotic Resistance

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antibiotic resistance bioinformatics genomics software

Resistome Gene Identifier (RGI) version 6.0.0

September 12, 2022May 25, 2023 agmcarthur

RGI version 6.0.0 – Major release, with parameter and reference data loading changes that may impact scripts. Please see updated README. Added an option (–keep)

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