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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics genomics publications

Performance characteristics of next-generation sequencing for the detection of antimicrobial resistance determinants in Escherichia coli genomes and metagenomes

June 1, 2022June 2, 2022 agmcarthur

Rooney et al. 2022 Jun 1;e0002222. Short-read sequencing can provide detection of multiple genomic determinants of antimicrobial resistance from single bacterial genomes and metagenomic samples.

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Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective

May 26, 2022May 26, 2022 agmcarthur

Kim et al. Clin Microbiol Rev. 2022 May 25;e0017921. Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern medicine.

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Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks

May 19, 2022 agmcarthur

Bertelli et al. Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000818. Outbreaks of virulent and/or drug-resistant bacteria have a significant impact on human health and major economic

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antibiotic resistance big data bioinformatics genomics publications software

Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents

April 13, 2022 agmcarthur

Sanderson et al. 2022. bioRxiv 10.1101/2022.04.11.487771. Enterococcus faecium is a ubiquitous opportunistic pathogen that is exhibiting increasing levels of antimicrobial resistance (AMR). Many of the

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Biochemistry & Biomedical Sciences Research Symposium (BBSRS) 2022!

March 2, 2022March 2, 2022 agmcarthur

Karyn Mukiri – Predicting the Total Resistome Mugdha Dave – Creation and standardization of automated bacterial pathogen genomic sequencing reporting through informatics

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Welcome Madeline McCarthy!

January 4, 2022 agmcarthur

The McArthur lab welcomes Madeline McCarthy, a recent MSc graduate of VIDO / USask, as she join us for her PhD studies in the McMaster

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Emily Panousis wins the Michael Kamin Hart Memorial Undergraduate Scholarship for her work on SARS-CoV-2 surveillance!

November 3, 2021November 5, 2021 agmcarthur

More information about IIDR Trainee Day and Michael Kamin Hart here.

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antibiotic resistance databases genomics lab members news

Farewell William!

August 31, 2021August 24, 2021 agmcarthur

Today we say goodbye to William Huynh, who first joined us as an undergraduate thesis student and then stayed on to work as the Comprehensive

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Jalees Nasir awarded 2021 Fred & Helen Knight Enrichment Award!

July 14, 2021July 14, 2021 agmcarthur

Congratulations to PhD student Jalees Nasir, who has been awarded the prestigious 2021 Fred & Helen Knight Enrichment Award, which recognizes exceptional promise in early

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antibiotic resistance genomics lab members

Congratulations Kara Tsang on the completion of your Ph.D.!

July 9, 2021July 9, 2021 agmcarthur
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