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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics genomics molecular epidemiology software

RGI 5 Released!

March 26, 2019December 30, 2020 agmcarthur

April 2019 big #card_release #RGI5! Resistance Gene Identifier Version 5: entirely new algorithms for metagenomics data, new options for genomes & assemblies. Extensively updated documentation,

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Recent Updates to the Comprehensive Antibiotic Resistance Database

March 19, 2019December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca CARD Curation: Expanded MCR, OXA & IMP beta-lactamase, and macrolide phosphotransferase (MPH) sequence curation. Updated nomenclature

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State of the CARD 2019

January 31, 2019December 30, 2020 agmcarthur

A week of lectures, demos, and training for the Comprehensive Antibiotic Resistance Database During McMaster Spring Mid-Term Recess (February 18-24), the McArthur lab is pleased

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antibiotic resistance bioinformatics databases genomics ontologies

Some Recent Funding News…

November 15, 2018December 30, 2020 agmcarthur

Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE). R. Beiko (PI; Dalhousie University), F. Brinkman (co-PI, Simon Fraser University), A.G. McArthur (co-Applicant) + 4 additional co-Applicants.

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antibiotic resistance bioinformatics presentations

Third American Society for Microbiology Meeting on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatics Pipelines

September 24, 2018December 30, 2020 agmcarthur

Maguire, F., B. Alcock, F.S. Brinkman, A.G. McArthur, & R.G. Beiko. 2018. AMRtime: Rapid Accurate Identification of Antimicrobial Resistance Determinants from Metagenomic Data. Oral presentation

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New undergraduate students!

September 18, 2018December 30, 2020 agmcarthur

Welcome #TeamVirulence, left to right: Rachel Tran (Biochem 3R06), Sally Min (BiomedDC 4A15), Anatoly Miroshnichencko (BiomedDC 4A15), and Rafik El Werfalli (BiomedDC 4A15), who are

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Kara Tsang wins Canadian Society of Microbiologists 2018 Top Student Oral Presentation Award!

June 22, 2018December 30, 2020 agmcarthur

Tsang, K.K., H. Zubyk, S. Chou, G.D. Wright, & A.G. McArthur. Decoding bad bags: Predicting antibiotic resistance phenotypes from genotype. Oral presentation at the Canadian Society of

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68th Annual Canadian Society of Microbiologist Conference in Tweets

June 22, 2018December 30, 2020 agmcarthur

Alcock, B., A.R. Raphenya, A.N. Sharma, K.K. Tsang, T.T.Y. Lau, A. Hernandez-Koutoucheva, & A.G. McArthur. 2018. Data and curation in the Comprehensive Antibiotic Resistance Database.

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Kara Tsang, Ph.D. Student

June 11, 2018December 30, 2020 agmcarthur

Kara Tsang passed her graduate transfer exam today, officially moving from the McMaster Biochemistry & Biomedical Sciences Masters program to the Ph.D. program. Kara’s work

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Tammy Lau awarded a 2018 IIDR Summer Student Fellowship

May 11, 2018December 30, 2020 agmcarthur

Tammy Lau has been awarded a prestigious Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Summer Student Fellowship for her work on development of k-mer approaches

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