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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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bioinformatics COVID19 epidemiology genomics molecular epidemiology SARS-CoV-2 virus epidemiology

Genomic Epidemiology of SARS-CoV-2: Canada & Ontario

January 15, 2021January 15, 2021 agmcarthur

In collaboration with our colleague Dr. Finlay Maguire (Dalhousie University) and as part of our ongoing work for Ontario’s COVID-19 Genomics Rapid Response Coalition and the Canadian

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bioinformatics genomics IIDR lab members news

Amos Raphenya, MSc Student

January 14, 2021 agmcarthur

It is with great pleasure the McArthur lab announces that Lead Developer for the Comprehensive Antibiotic Resistance Database (CARD), Amos Raphenya, is starting his M.Sc.

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antibiotic resistance big data genomics publications

Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance

January 8, 2021January 8, 2021 agmcarthur

Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, & Andrew G. McArthur Microbial Genomics, in

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lab members publications virulence

Bacterial type VII secretion: an important player in host‐microbe and microbe‐microbe interactions

January 8, 2021January 8, 2021 agmcarthur

Hiu‐Ki R. Tran, Dirk W. Grebenc, Timothy A. Klein, John C. Whitney Molecular Microbiology, in press. Type VII secretion systems (T7SSs) are poorly understood protein

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bioinformatics genomics molecular epidemiology publications virulence

Whole genome sequence of Corynebacterium kroppenstedtii isolated from a case of recurrent granulomatous mastitis

December 29, 2020February 7, 2021 agmcarthur

Charlie Tan, Fang-I Lu, Patryk Aftanas, Kara Tsang, Samira Mubareka, Adrienne Chan, & Robert Kozak IDCases. 2020. 23:e01034. We describe the case of a 33-year-old

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antibiotic resistance genomics publications

Recurrent multidrug-resistant Salmonella enterica serovar Typhimurium bacteremia in a returned traveller

December 16, 2020December 30, 2020 agmcarthur

Adam S Komorowski, Xena X Li, Eva Piessens, Andrew G McArthur, & Ameen Patel Journal of the Association of Medical Microbiology and Infectious Disease Canada,

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bioinformatics genomics publications virulence

Structural basis for effector transmembrane domain recognition by type VI secretion system chaperones

December 16, 2020December 30, 2020 agmcarthur

Shehryar Ahmad, Kara L Tsang, Kartik Sachar, Dennis Quentin, Tahmid M Tashin, Nathan P Bullen, Stefan Raunser, Andrew G McArthur, Gerd Prehna, & John C

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antibiotic resistance bioinformatics databases genomics lab members ontologies presentations

ASMNGS 2020 Virtual Conference – 4th ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines

December 10, 2020December 30, 2020 agmcarthur

Aaron Petkau performed his Visual & Automated Disease Analytics Program internship (Univ. of Manitoba) with us during the summer of 2020, creating the CARD:Live graphic

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COVID19 publications

A regional Canadian expert consensus on recommendations for restoring exercise and pulmonary function testing in low and moderate-to-high community prevalence coronavirus disease 2019 (COVID-19) settings

November 20, 2020December 30, 2020 agmcarthur

Sarah Khan, Kara K Tsang, Dominik Mertz, Myrna Dolovich, Marcel Tunks, Catherine Demers, Kelly Hassall, Neil Maharaj, Karen Margallo, Maureen Cividino, Zain Chagla, & MyLinh

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antibiotic resistance bioinformatics COVID19 databases epidemiology genomics IIDR lab members molecular epidemiology presentations SARS-CoV-2 text mining virus epidemiology

IIDR Trainee Day 2020! Forging the Future of Infectious Disease Research

November 11, 2020December 30, 2020 agmcarthur

Nasir, J.A et al. 2020. SIGNALing the Need for Surveillance: A Comparison of Whole Genome Sequencing Methods for SARS-CoV-2. Edalatmand, A. & A.G. McArthur. 2020.

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