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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance bioinformatics genomics molecular epidemiology software

RGI 5 Released!

March 26, 2019December 30, 2020 agmcarthur

April 2019 big #card_release #RGI5! Resistance Gene Identifier Version 5: entirely new algorithms for metagenomics data, new options for genomes & assemblies. Extensively updated documentation,

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antibiotic resistance bioinformatics databases genomes molecular epidemiology ontologies

Recent Updates to the Comprehensive Antibiotic Resistance Database

March 19, 2019December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca CARD Curation: Expanded MCR, OXA & IMP beta-lactamase, and macrolide phosphotransferase (MPH) sequence curation. Updated nomenclature

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State of the CARD 2019

January 31, 2019December 30, 2020 agmcarthur

A week of lectures, demos, and training for the Comprehensive Antibiotic Resistance Database During McMaster Spring Mid-Term Recess (February 18-24), the McArthur lab is pleased

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antibiotic resistance IIDR molecular epidemiology presentations

Applying genomic surveillance to the clinic – lessons on late onset infection prevention in the NICU

January 23, 2019December 30, 2020 agmcarthur
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antibiotic resistance bioinformatics databases genomics ontologies

Some Recent Funding News…

November 15, 2018December 30, 2020 agmcarthur

Antimicrobial Resistance: Emergence, Transmission, and Ecology (ARETE). R. Beiko (PI; Dalhousie University), F. Brinkman (co-PI, Simon Fraser University), A.G. McArthur (co-Applicant) + 4 additional co-Applicants.

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antibiotic resistance databases genomics molecular epidemiology presentations

Reunião de Citogenética do Brasil Central & XII Workshop de Genética da PUC Goiás

October 17, 2018December 30, 2020 agmcarthur

Some invitations are more special than others. Dr. Peixoto da Cruz and I went to graduate school together in British Columbia (a long time ago!)

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antibiotic resistance bioinformatics presentations

Third American Society for Microbiology Meeting on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatics Pipelines

September 24, 2018December 30, 2020 agmcarthur

Maguire, F., B. Alcock, F.S. Brinkman, A.G. McArthur, & R.G. Beiko. 2018. AMRtime: Rapid Accurate Identification of Antimicrobial Resistance Determinants from Metagenomic Data. Oral presentation

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Kara Tsang wins Canadian Society of Microbiologists 2018 Top Student Oral Presentation Award!

June 22, 2018December 30, 2020 agmcarthur

Tsang, K.K., H. Zubyk, S. Chou, G.D. Wright, & A.G. McArthur. Decoding bad bags: Predicting antibiotic resistance phenotypes from genotype. Oral presentation at the Canadian Society of

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68th Annual Canadian Society of Microbiologist Conference in Tweets

June 22, 2018December 30, 2020 agmcarthur

Alcock, B., A.R. Raphenya, A.N. Sharma, K.K. Tsang, T.T.Y. Lau, A. Hernandez-Koutoucheva, & A.G. McArthur. 2018. Data and curation in the Comprehensive Antibiotic Resistance Database.

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antibiotic resistance bioinformatics databases genomics lab members

Kara Tsang, Ph.D. Student

June 11, 2018December 30, 2020 agmcarthur

Kara Tsang passed her graduate transfer exam today, officially moving from the McMaster Biochemistry & Biomedical Sciences Masters program to the Ph.D. program. Kara’s work

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