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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 publications

Silver linings of the COVID-19 pandemic from an infection prevention and control perspective

November 10, 2020December 30, 2020 agmcarthur

Kara K Tsang, Dominik Mertz, Cindy O’Neill, & Sarah Khan Infect Control Hosp Epidemiol. 2020 Nov 4;1-7. As the COVID-19 pandemic evolved, infection prevention and

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publications

De novo necroptosis creates an inflammatory environment mediating tumor susceptibility to immune checkpoint inhibitors

November 8, 2020December 30, 2020 agmcarthur

Workenhe, S.T., A. Nguyen, D. Bakhshinyan, J. Wei, D.N. Hare, K.L. MacNeill, Y. Wan, A. Oberst, J.L. Bramson, J.A. Nasir, S.K. Singh, A.G. McArthur, &

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COVID19 publications SARS-CoV-2 virus epidemiology

Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus

September 9, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Andrew C Doxey, Benjamin J-M Tremblay, Michael J Mansfield, Sonu Subudhi, Jeremy A Hirota, Matthew S Miller, Andrew G McArthur, Samira Mubareka, &

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antibiotic resistance publications

Overcoming acquired and native macrolide resistance with bicarbonate

September 8, 2020December 30, 2020 agmcarthur

Maya A Farha, Craig MacNair, Lindsey A Carfrae, Sara S El Zahed, Michael Joseph Ellis, Hiu-Ki R Tran, Andrew McArthur, & Eric D Brown ACS

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bioinformatics COVID19 epidemiology genomics molecular epidemiology publications SARS-CoV-2 software virus epidemiology

A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

August 18, 2020December 30, 2020 agmcarthur

Jalees A. Nasir, Robert A. Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, Muhannad Alruwaili, Arinjay Banerjee, Hamza Mbareche, Brian

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COVID19 epidemiology publications SARS-CoV-2 virus epidemiology

Preprint: The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

August 8, 2020December 30, 2020 agmcarthur

Emma J. Griffiths, Ruth E. Timme, Andrew J. Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Catarina Inês Mendes, Simon H. Tausch, Allison Black, Thomas R.

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genomics publications virus epidemiology

The origins and genomic diversity of American Civil War Era smallpox vaccine strains

July 20, 2020December 30, 2020 agmcarthur

Ana T Duggan, Jennifer Klunk, Ashleigh F Porter, Anna N Dhody, Robert Hicks, Geoffrey L Smith, Margaret Humphreys, Andrea M McCollum, Whitni B Davidson, Kimberly

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COVID19 molecular epidemiology publications SARS-CoV-2 virulence virus epidemiology

Preprint: Early temporal dynamics of cellular responses to SARS-CoV-2

June 30, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Patrick Budylowski, Daniel Richard, Hassaan Maan, Jennifer A. Aguiar, Nader El-Sayes, Michael R. D’Agostino, Benjamin J.-M. Tremblay, Sam Afkhami, Mehran Karimzadeh, Lily Yip,

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big data COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Genotyping SARS-CoV-2 through an interactive web application

June 14, 2020December 30, 2020 agmcarthur

Maan, H., H. Mbareche, A.R. Raphenya, A. Banerjee, J.A. Nasir, R.A. Kozak, N. Knox, S. Mubareka, A.G. McArthur, & B. Wang. The Lancet Digital Health,

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bioinformatics genomics publications

Strandedness during cDNA synthesis, the stranded parameter in Htseq-Count and analysis of RNA-Seq aata

May 19, 2020December 30, 2020 agmcarthur

Krishna A Srinivasan, Suman K Virdee, Andrew G McArthur Brief Funct Genomics 2020 May 16 [Epub ahead of print] RNA sequencing (RNA-Seq) is a complicated

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antibiotic resistance databases publications

Detection of Antimicrobial Resistance Using Proteomics and the Comprehensive Antibiotic Resistance Database: a Case Study

December 26, 2019December 30, 2020 agmcarthur

Chen CY, Clark CG, Langner S, Boyd DA, Bharat A, McCorrister SJ, McArthur AG, Graham MR, Westmacott GR, Van Domselaar G Proteomics Clin Appl. 2019

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publications

Metformin-induced increases in GDF15 are important for suppressing appetite and promoting weight loss

December 10, 2019December 30, 2020 agmcarthur

Day EA, Ford RJ, Smith BK, Mohammadi-Shemirani P, Morrow MR, Gutgesell RM, Lu R, Raphenya AR, Kabiri M, McArthur AG, McInnes N, Hess S, Paré

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molecular epidemiology phylogenetics publications

An interbacterial toxin inhibits target cell growth by synthesizing (p)ppApp

November 6, 2019December 30, 2020 agmcarthur

Ahmad S, Wang B, Walker MD, Tran H-KR, Stogios PJ, Savchenko A, Grant RA, McArthur AG, Laub MT, Whitney JC Nature 2019 Nov 6. [Epub

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology ontologies publications

CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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antibiotic resistance genomics publications

Capturing the Resistome: A targeted capture method to reveal antibiotic resistance determinants in metagenomes

October 16, 2019December 30, 2020 agmcarthur

Guitor AK, Raphenya AR, Klunk J, Kuch M, Alcock B, Surette MG, McArthur AG, Poinar HN, Wright GD. Editor’s Pick! Antimicrobial Agents and Chemotherapy 2019 Oct

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antibiotic resistance big data bioinformatics genomics IIDR publications

Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance

August 19, 2019December 30, 2020 agmcarthur

Waglechner N, McArthur AG, Wright GD. Nat Microbiol. 2019 Aug 12. [Epub ahead of print] Glycopeptide antibiotics are produced by Actinobacteria through biosynthetic gene clusters

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parasitology publications

PCR detection of mixed and zoonoses Malaria using Plasmodium spp dynein light chain (dlc-tctex) gene

August 6, 2019December 30, 2020 agmcarthur

Kariuki MW, Githui E, McArthur AG, Aman RA, Njagi NM, Mwangemi AC, Kamau LW Annual Research & Review in Biology, 32, 1-12. Novel gene targets

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publications

Preprints!

July 19, 2019December 30, 2020 agmcarthur

Faltyn, M., B. Alcock, & A.G. McArthur. 2019. Evolution and nomenclature of the trimethoprim resistant dihydrofolate (dfr) reductases. Preprints 2019, 2019050137. [Preprint] Tsang, K.K., D.J.

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publications

Preprints!

March 15, 2019December 30, 2020 agmcarthur

Srinivasan, K.A., S.K. Virdee, & A.G. McArthur. 2019. Strandedness during cDNA synthesis, the stranded parameter in htseq-count, and analysis of RNA-Seq data. Preprints 2019, 2019030124.

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kinesiology publications

Failed recovery of glycemic control and myofibrillar protein synthesis with 2 wk of physical inactivity in overweight, prediabetic older adults.

July 16, 2018December 30, 2020 agmcarthur

McGlory C, von Allmen MT, Stokes T, Morton RW, Hector AJ, Lago BA, Raphenya AR, Smith BK, McArthur AG, Steinberg GR, Baker SK, Phillips SM

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