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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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antibiotic resistance genomics lab members

Congratulations Kara Tsang on the completion of your Ph.D.!

July 9, 2021July 9, 2021 agmcarthur
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antibiotic resistance bioinformatics genomics lab members presentations

Summer Conferences 2021

July 5, 2021July 5, 2021 agmcarthur

All online this year due to COVID-19, but some great presentations and virtual posters by our trainees and collaborators! Edalatmand, A. & A.G. McArthur. 2021.

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antibiotic resistance bioinformatics genomics publications

Performance characteristics of next-generation sequencing for antimicrobial resistance gene detection in genomes and metagenomes

June 29, 2021June 29, 2021 agmcarthur

Ashley M. Rooney, Amogelang R. Raphenya, Roberto G. Melano, Christine Seah, Noelle R. Yee, Derek R. MacFadden, Andrew G. McArthur, Pierre H.H. Schneeberger, Bryan Coburn.

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COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Temporal dynamics and evolution of SARS-CoV-2 demonstrate the necessity of ongoing viral genome sequencing in Ontario, Canada

May 8, 2021May 8, 2021 agmcarthur

Sjaarda, C.P., J.L. Guthrie, S. Mubareka, J.T. Simpson, B. Hamelin, H. Wong, L. Mortimer, R. Slinger, A.G. McArthur, M. Desjardins, K. Douchant, Ontario’s COVID-19 Genomics

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bioinformatics COVID19 epidemiology genomics molecular epidemiology SARS-CoV-2 virus epidemiology

Genomic Epidemiology of SARS-CoV-2: Canada & Ontario

January 15, 2021January 15, 2021 agmcarthur

In collaboration with our colleague Dr. Finlay Maguire (Dalhousie University) and as part of our ongoing work for Ontario’s COVID-19 Genomics Rapid Response Coalition and the Canadian

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bioinformatics genomics IIDR lab members news

Amos Raphenya, MSc Student

January 14, 2021 agmcarthur

It is with great pleasure the McArthur lab announces that Lead Developer for the Comprehensive Antibiotic Resistance Database (CARD), Amos Raphenya, is starting his M.Sc.

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antibiotic resistance big data genomics publications

Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance

January 8, 2021January 8, 2021 agmcarthur

Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, & Andrew G. McArthur Microbial Genomics, in

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bioinformatics genomics molecular epidemiology publications virulence

Whole genome sequence of Corynebacterium kroppenstedtii isolated from a case of recurrent granulomatous mastitis

December 29, 2020February 7, 2021 agmcarthur

Charlie Tan, Fang-I Lu, Patryk Aftanas, Kara Tsang, Samira Mubareka, Adrienne Chan, & Robert Kozak IDCases. 2020. 23:e01034. We describe the case of a 33-year-old

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antibiotic resistance genomics publications

Recurrent multidrug-resistant Salmonella enterica serovar Typhimurium bacteremia in a returned traveller

December 16, 2020December 30, 2020 agmcarthur

Adam S Komorowski, Xena X Li, Eva Piessens, Andrew G McArthur, & Ameen Patel Journal of the Association of Medical Microbiology and Infectious Disease Canada,

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bioinformatics genomics publications virulence

Structural basis for effector transmembrane domain recognition by type VI secretion system chaperones

December 16, 2020December 30, 2020 agmcarthur

Shehryar Ahmad, Kara L Tsang, Kartik Sachar, Dennis Quentin, Tahmid M Tashin, Nathan P Bullen, Stefan Raunser, Andrew G McArthur, Gerd Prehna, & John C

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antibiotic resistance bioinformatics databases genomics lab members ontologies presentations

ASMNGS 2020 Virtual Conference – 4th ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines

December 10, 2020December 30, 2020 agmcarthur

Aaron Petkau performed his Visual & Automated Disease Analytics Program internship (Univ. of Manitoba) with us during the summer of 2020, creating the CARD:Live graphic

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antibiotic resistance bioinformatics COVID19 databases epidemiology genomics IIDR lab members molecular epidemiology presentations SARS-CoV-2 text mining virus epidemiology

IIDR Trainee Day 2020! Forging the Future of Infectious Disease Research

November 11, 2020December 30, 2020 agmcarthur

Nasir, J.A et al. 2020. SIGNALing the Need for Surveillance: A Comparison of Whole Genome Sequencing Methods for SARS-CoV-2. Edalatmand, A. & A.G. McArthur. 2020.

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big data bioinformatics COVID19 epidemiology genomics IIDR molecular epidemiology news SARS-CoV-2 virus epidemiology

McArthur Lab & McMaster contribute to global genomic surveillance of SARS-CoV-2

October 21, 2020December 30, 2020 agmcarthur

 

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antibiotic resistance genomics graduation lab members software

Congratulations Martins Oloni!

September 11, 2020December 30, 2020 agmcarthur

Congratulations Martins Oloni on the successful defence of your Masters of Science! New Delhi Metallo-Beta-Lactamase (NDM) plasmid predictions The complete detection and genome sequencing of

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bioinformatics COVID19 epidemiology genomics molecular epidemiology publications SARS-CoV-2 software virus epidemiology

A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

August 18, 2020December 30, 2020 agmcarthur

Jalees A. Nasir, Robert A. Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, Muhannad Alruwaili, Arinjay Banerjee, Hamza Mbareche, Brian

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genomics publications virus epidemiology

The origins and genomic diversity of American Civil War Era smallpox vaccine strains

July 20, 2020December 30, 2020 agmcarthur

Ana T Duggan, Jennifer Klunk, Ashleigh F Porter, Anna N Dhody, Robert Hicks, Geoffrey L Smith, Margaret Humphreys, Andrea M McCollum, Whitni B Davidson, Kimberly

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big data COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Genotyping SARS-CoV-2 through an interactive web application

June 14, 2020December 30, 2020 agmcarthur

Maan, H., H. Mbareche, A.R. Raphenya, A. Banerjee, J.A. Nasir, R.A. Kozak, N. Knox, S. Mubareka, A.G. McArthur, & B. Wang. The Lancet Digital Health,

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bioinformatics COVID19 genomics SARS-CoV-2 virus epidemiology

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL)

May 29, 2020December 30, 2020 agmcarthur

Thanks to hard work by Jalees Nasir, Amos Raphenya, Dr. Kendrick Smith (Perimeter Institute), and Dr. Finlay Maguire (Dalhousie) with help from our Ontario Coronavirus

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bioinformatics genomics publications

Strandedness during cDNA synthesis, the stranded parameter in Htseq-Count and analysis of RNA-Seq aata

May 19, 2020December 30, 2020 agmcarthur

Krishna A Srinivasan, Suman K Virdee, Andrew G McArthur Brief Funct Genomics 2020 May 16 [Epub ahead of print] RNA sequencing (RNA-Seq) is a complicated

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antibiotic resistance genomics

Excited to be collaborating with the Elliot Lab!

May 5, 2020December 30, 2020 agmcarthur

More information: The IIDR & DBCAD Announce Funding for Collaborative Projects

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