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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 publications SARS-CoV-2 virus epidemiology

Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus

September 9, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Andrew C Doxey, Benjamin J-M Tremblay, Michael J Mansfield, Sonu Subudhi, Jeremy A Hirota, Matthew S Miller, Andrew G McArthur, Samira Mubareka, &

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antibiotic resistance publications

Overcoming acquired and native macrolide resistance with bicarbonate

September 8, 2020December 30, 2020 agmcarthur

Maya A Farha, Craig MacNair, Lindsey A Carfrae, Sara S El Zahed, Michael Joseph Ellis, Hiu-Ki R Tran, Andrew McArthur, & Eric D Brown ACS

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lab members

Welcome new MSc student Arman Edalatmand!

September 8, 2020December 30, 2020 agmcarthur

We are very excited to have Arman Edalatmand join us as a new MSc student in the Biochemistry & Biomedical Sciences graduate program! Arman has

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lab members

New thesis students!

September 8, 2020December 30, 2020 agmcarthur

The McArthur Lab welcomes our 2020-2021 4th year thesis students from both the Biochemistry & Biomedical Sciences (BBS) and Biomedical Discovery & Commercialization (BDC) programs!

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bioinformatics COVID19 epidemiology genomics molecular epidemiology publications SARS-CoV-2 software virus epidemiology

A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture

August 18, 2020December 30, 2020 agmcarthur

Jalees A. Nasir, Robert A. Kozak, Patryk Aftanas, Amogelang R. Raphenya, Kendrick M. Smith, Finlay Maguire, Hassaan Maan, Muhannad Alruwaili, Arinjay Banerjee, Hamza Mbareche, Brian

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COVID19 epidemiology publications SARS-CoV-2 virus epidemiology

Preprint: The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

August 8, 2020December 30, 2020 agmcarthur

Emma J. Griffiths, Ruth E. Timme, Andrew J. Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Catarina Inês Mendes, Simon H. Tausch, Allison Black, Thomas R.

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genomics publications virus epidemiology

The origins and genomic diversity of American Civil War Era smallpox vaccine strains

July 20, 2020December 30, 2020 agmcarthur

Ana T Duggan, Jennifer Klunk, Ashleigh F Porter, Anna N Dhody, Robert Hicks, Geoffrey L Smith, Margaret Humphreys, Andrea M McCollum, Whitni B Davidson, Kimberly

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awards lab members

Congratulations Kara Tsang and Arman Edalatmand!

July 9, 2020December 30, 2020 agmcarthur

Congratulations to Kara Tsang and Arman Edalatmand for being awarded Ontario Graduate Scholarships! Spoiler Alert: Arman is joining us for his Biochemistry & Biomedical Sciences

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COVID19 molecular epidemiology publications SARS-CoV-2 virulence virus epidemiology

Preprint: Early temporal dynamics of cellular responses to SARS-CoV-2

June 30, 2020December 30, 2020 agmcarthur

Arinjay Banerjee, Patrick Budylowski, Daniel Richard, Hassaan Maan, Jennifer A. Aguiar, Nader El-Sayes, Michael R. D’Agostino, Benjamin J.-M. Tremblay, Sam Afkhami, Mehran Karimzadeh, Lily Yip,

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big data COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

Genotyping SARS-CoV-2 through an interactive web application

June 14, 2020December 30, 2020 agmcarthur

Maan, H., H. Mbareche, A.R. Raphenya, A. Banerjee, J.A. Nasir, R.A. Kozak, N. Knox, S. Mubareka, A.G. McArthur, & B. Wang. The Lancet Digital Health,

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bioinformatics COVID19 genomics SARS-CoV-2 virus epidemiology

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL)

May 29, 2020December 30, 2020 agmcarthur

Thanks to hard work by Jalees Nasir, Amos Raphenya, Dr. Kendrick Smith (Perimeter Institute), and Dr. Finlay Maguire (Dalhousie) with help from our Ontario Coronavirus

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BDC COVID19 epidemiology lab members molecular epidemiology SARS-CoV-2 virus epidemiology

Welcome Ahmed Draia!

May 29, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes Ahmed Draia for an internship placement as part of McMaster’s Masters of Biomedical Discovery & Commercialization (MBDC) program. Reflective of his

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bioinformatics genomics publications

Strandedness during cDNA synthesis, the stranded parameter in Htseq-Count and analysis of RNA-Seq aata

May 19, 2020December 30, 2020 agmcarthur

Krishna A Srinivasan, Suman K Virdee, Andrew G McArthur Brief Funct Genomics 2020 May 16 [Epub ahead of print] RNA sequencing (RNA-Seq) is a complicated

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antibiotic resistance genomics

Excited to be collaborating with the Elliot Lab!

May 5, 2020December 30, 2020 agmcarthur

More information: The IIDR & DBCAD Announce Funding for Collaborative Projects

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antibiotic resistance bioinformatics databases genomics IIDR lab members molecular epidemiology ontologies

New CARD Team Member!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes new Curator-Developer William Huynh to the Comprehensive Antibiotic Resistance Database staff. Looking forward to pushing CARD forward with William’s help!

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COVID19 genomics

Ongoing SARS-CoV-2 Efforts

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab is honoured to collaborate with our clinical colleagues across Ontario in sequencing of SARS-CoV-2 clinical isolates, to better understand the epidemiology of

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antibiotic resistance bioinformatics genomics lab members

Summer students!

May 2, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes back summer students Rachel Tran & Arman Edalatmand plus first timers Marcel Jansen & Emily Panousis! These four will be covering

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antibiotic resistance genomics lab members molecular epidemiology

New PhD Student!

April 27, 2020December 30, 2020 agmcarthur

Welcome Ashraf Bazan, who has joined the lab and the McMaster Biochemistry & Biomedical Sciences graduate program! A familiar face in the IIDR as he started

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COVID19 genomics SARS-CoV-2 virus epidemiology

Preprint: Isolation, sequence, infectivity and replication kinetics of SARS-CoV-2

April 14, 2020December 30, 2020 agmcarthur

Banerjee, A., J.A. Nasir, P. Budylowski, L. Yip, P. Aftanas, N. Christie, A. Ghalami, K. Baid, A.R. Raphenya, J.A. Hirota, M.S. Miller, A.J. McGeer, M.A.

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COVID19 genomics SARS-CoV-2 virus epidemiology

Innovation at McMaster University During the COVID-19 Crisis

April 9, 2020December 30, 2020 agmcarthur

Drs. Andrew McArthur & Arinjay Banerjee giving the background story on isolation of the live SARS-CoV-2 virus in Canada.

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