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Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 epidemiology publications SARS-CoV-2 virus epidemiology

Preprint: The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

August 8, 2020December 30, 2020 agmcarthur

Emma J. Griffiths, Ruth E. Timme, Andrew J. Page, Nabil-Fareed Alikhan, Dan Fornika, Finlay Maguire, Catarina Inês Mendes, Simon H. Tausch, Allison Black, Thomas R.

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Welcome Ahmed Draia!

May 29, 2020December 30, 2020 agmcarthur

The McArthur lab welcomes Ahmed Draia for an internship placement as part of McMaster’s Masters of Biomedical Discovery & Commercialization (MBDC) program. Reflective of his

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antibiotic resistance COVID19 epidemiology genomics lab members molecular epidemiology news SARS-CoV-2 virus epidemiology

McArthur Lab & CARD during SARS-CoV-2

March 23, 2020December 30, 2020 agmcarthur

Quick update on the status of the McArthur Lab and the Comprehensive Antibiotic Resistance Database. While our home institution McMaster University is closed to on-site

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology ontologies publications

CARD 2020: antibiotic resistome surveillance with the Comprehensive Antibiotic Resistance Database

October 30, 2019December 30, 2020 agmcarthur

Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran

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epidemiology molecular epidemiology ontologies presentations virulence

AMMI-CACMID: Clostridioides difficile strain divergence over time

April 15, 2019December 30, 2020 agmcarthur

Speicher, D.J., K. Luinstra, J. Maciejewski, K.K. Tsang, A.G. McArthur, & M. Smieja. 2019. Clostridioides difficile strain divergence over time. Oral presentation at the Association of

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Recent Updates to the Comprehensive Antibiotic Resistance Database

April 16, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca CARD Curation: Addition of HERA, TRU, & ACI beta-lactamases, sul4, and new quinolone efflux pumps. Antibiotic

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bioinformatics epidemiology genomics

Some Funding News…

March 17, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database: Expanded tools for molecular surveillance of antimicrobial resistance (AMR) in the environment, agriculture, and clinic. A.G. McArthur (PI), G. Van

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antibiotic resistance bioinformatics epidemiology genomics ontologies software

CAIN, GenEpiO & IRIDA

March 17, 2018December 30, 2020 agmcarthur

The McArthur lab and the Comprehensive Antibiotic Resistance Database are proud to join the Canadian Anti-Infective Innovation Network, International Genomic Epidemiology Application Ontology Consortium, and Integrated Rapid

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antibiotic resistance big data bioinformatics databases epidemiology genomics molecular epidemiology news software

Major Update of the Comprehensive Antibiotic Resistance Database

February 2, 2018December 30, 2020 agmcarthur

The Comprehensive Antibiotic Resistance Database has been updated, http://card.mcmaster.ca This February 2018 release is our largest to date and includes new data types, a new

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Welcome Alexandra Florescu!

January 3, 2018December 30, 2020 agmcarthur

4th year Bachelor of Health Sciences student Alexandra Florescu has joined us for her Biochem 3A03 (Biochemical Research Practice) course. Alexandra will be collaborating with

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