Today we say farewell to Arjun Sharma & Suman Virdee. Arjun joined the lab as a second year volunteer, staying to perform a Biochem 3R06 research project. He has been very active in our Comprehensive Antibiotic Resistance Database project, co-developing our CARD*Shark text mining tools for computer-guided curation of literature in PubMed, pipelines for our clinical isolate genome sequencing work, and developing novel algorithms for predicting glycopeptide resistance from genome assemblies. He was the recipient of an IIDR Summer Student Fellowship and leaves the Biochemistry program to enter medical school at the University of Toronto. Suman joined the lab in the 4th year of the Biomedical Discovery & Commercialization program, performing her thesis research on RNA-Seq bioinformatics workflows in a collaboration between our lab and the laboratory of Dr. Kristen Hope (McMaster Stem Cell and Cancer Research Institute), extending her research into the summer by winning a CIHR Summer Undergraduate Research Award. Suman finished her degree and this September starts in the McMaster Master of Science in Global Health program. Bon chance Suman & Arjun!

 

 

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tammy-lau3rd year Biochemistry & Biomedical Sciences student Tammy Lau has joined us for her Biochem 3A03 (Biochemical Research Practice) course. Tammy will be collaborating with Dr. Lesley MacNeil in development of a bioinformatics pipeline for a new technology for tissue-specific expression profiling in the important model organism C. elegans. Support from this project comes from a new Michael G. DeGroote Institute for Infectious Disease Research (McMaster) Research Grant. Welcome Tammy!

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arjun-at-iidr-trainee-daykirill-usra-poster

Three of our undergraduate students gave poster presentations in the last month. Arjun Sharma (Biochemistry & Biomedical Sciences 3rd year) outlined his work on developing the Comprehensive Antibiotic Resistance Database’s (arpcard.mcmaster.ca) CARD*Shark text mining algorithms at the Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Trainee Day while Kirill Pankov (Biomedical Discovery & Commercialization 4th year) presented the results of his summer NSERC Undergraduate Student Research Award (USRA) research in the Laboratory of Dr. Joanna Wilson into the origin of Cnidarian P450 enzymes, work he is continuing in our lab as part of his thesis research. Mohammad Khan (Biomedical Discovery & Commercialization 4th year), a thesis student in the Laboratory of Dr. Eric Brown that collaborates with our group, also presented a poster at IIDR Trainee Day on his work on chemical-genetic interaction database design.

Sharma, A.N., S. Doshi, A.R. Raphenya, B. Alcock, B.M. Dave, B.A. Lago, K.K. Tsang, & A.G. McArthur. 2016. CARDShark: Computer-assisted biocuration of the Comprehensive Antibiotic Resistance Database. Poster presentation at the 2016 Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Trainee Day, Hamilton, Ontario, Canada.

Pankov, K., A.G. McArthur & J.Y. Wilson. 2016. The Cytochrome P450 (CYP) superfamily in the Cnidarian phylum. Poster presentation at the 2016 Undergraduate Student Research Awards (USRA) Poster Session, Hamilton, Ontario, Canada.

Khan, M.A., S. French, B. Aubie, A.G McArthur & E.D. Brown. 2016. Challenging common screening filters through analysis of a chemical-genetic screening database. Poster presentation at the 2016 Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Trainee Day, Hamilton, Ontario, Canada.

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Fellowship-winners-2016-1Ten undergraduate students from the faculties of Science and Health Sciences have been awarded the prestigious Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Summer Student Fellowship, including our own Briony Lago (third from the right). This highly competitive fellowship, now in its fourth year and worth $1,000, is designed to support students working in the labs of IIDR members during their summer practicum, which runs from May to August. Briony Lago joined the lab as part of her McMaster Chemical Biology Co-Op program, working on our ‘Omic’ Responses & Inactivity in Aging project (a collaboration with colleagues in Kinesiology & Chemistry), our collaboration with Bates College on the role of Nfe2 in oxidative stress response during zebrafish development, and biocuration of our Comprehensive Antibiotic Resistance Database.

See: Q&A with IIDR Summer Fellowship recipient Briony Lago

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BznF4UsCQAActU5.jpg-largeToday was the annual Michael G. DeGroote Institute for Infectious Disease Research (IIDR) Research Trainee Day, a great day of presentations and posters. Congratulations to the Award Winners.