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McArthur Lab

Michael G. DeGroote Institute for Infectious Disease Research, McMaster University

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COVID19 genomics publications SARS-CoV-2 virus epidemiology

Sensitivity to neutralizing antibodies and resistance to Type I interferons in SARS-CoV-2 R.1 lineage variants, Canada

June 21, 2023June 21, 2023 agmcarthur

Jacob et al. Emerg Infect Dis. 2023 Jun 12;29(7). Isolating and characterizing emerging SARS-CoV-2 variants is key to understanding virus pathogenesis. In this study, we

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Congratulations Amogelang Raphenya on the completion of your M.Sc.!

June 16, 2023June 16, 2023 agmcarthur

While many know of Amogelang (Amos) Raphenya as the Lead CARD Developer and a local, national, and international resource for genomic surveillance of antimicrobial resistance,

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bioinformatics genomics lab members

Welcome Colin Bruce!

June 12, 2023June 16, 2023 agmcarthur

Colin Bruce joins us by way of the laboratory of Dr. Jennifer Stearns and will be completing the last year of his PhD studies with

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antibiotic resistance bioinformatics databases genomics news software

Happy 10th Anniversary CARD!

June 11, 2023June 12, 2023 agmcarthur

Today the Comprehensive Antibiotic Resistance Database turns 10 years old! While it started a few years before this in the laboratory of Dr. Gerry Wright,

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awards lab members

Congratulations Tiffany Ta!

May 28, 2023May 28, 2023 agmcarthur
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Chan Zuckerberg ID and the Comprehensive Antibiotic Resistance Database collaborate to add Resistome prediction to the CZ ID platform

May 25, 2023May 25, 2023 agmcarthur

CARD and CZ ID are thrilled to launch a new CZ ID module that allows researchers to detect and analyze antimicrobial resistance (AMR) genes in

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bioinformatics COVID19 genomics SARS-CoV-2 software virus epidemiology

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL) update

May 25, 2023May 25, 2023 agmcarthur

The SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL) has been updated to version 1.6.2, with an important hotfix to address software version incompatibility for rules using

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COVID19 genomics molecular epidemiology publications SARS-CoV-2 virus epidemiology

SARS-COV-2 outbreak investigation using contact tracing and whole-genome sequencing in an Ontario tertiary care hospital

May 6, 2023May 6, 2023 agmcarthur

Tsang et al. Microbiol Spectr. 2023 Apr 24;e0190022. Genomic epidemiology can facilitate an understanding of evolutionary history and transmission dynamics of a severe acute respiratory

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lab members

Summer Students 2023

May 1, 2023May 6, 2023 agmcarthur

Curation volunteer Kriti Goel (3rd year Biochemistry) will be joining us as a 2023 Summer Student to sketch out how the Comprehensive Antibiotic Resistance Database

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Bonne Chance Arman!

April 30, 2023May 6, 2023 agmcarthur

Volunteer starting in 2019, thesis student, summer student, Masters student (2020-2022), and developer, Arman Edalatmand has been a great lab member for over 4 years,

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antibiotic resistance big data databases genomics ontologies presentations

Biocuration 2023

April 24, 2023May 6, 2023 agmcarthur

Alcock, B.P., A.R. Raphenya, A. Edalatmand, & A.G. McArthur. 2023. The Comprehensive Antibiotic Resistance Database – curating the global resistome. Oral presentation at the 16th

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antibiotic resistance big data databases ontologies publications software

CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

April 21, 2023April 21, 2023 agmcarthur

Arman Edalatmand & Andrew G McArthur. 2023. Database, doi: 10.1093/database/baad023. Scientific literature is published at a rate that makes manual data extraction a highly time-consuming

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antibiotic resistance bioinformatics databases genomics lab members molecular epidemiology outreach teaching

CBW & VTEC 2023

April 18, 2023May 6, 2023 agmcarthur

They’re back! Thanks to Karyn Mukiri, Jalees Nasir, and Madeline McCarthy for serving as Teaching Assistants for the re-booted Canadian Bioinformatics Workshop in Infectious Disease

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Congratulations Nisha Tailor & Fatimah Jessa, 2022-2023 Thesis Students!

April 15, 2023April 15, 2023 agmcarthur

Nisha & Fatimah completed the year with their Biomedical Discovery & Commercialization thesis presentations on Shigella bait capture and resistome software accuracy, respectively. Great work

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genomics lab members Mitacs molecular epidemiology presentations SARS-CoV-2 virus epidemiology

33rd European Congress of Clinical Microbiology & Infectious Diseases

April 15, 2023May 6, 2023 agmcarthur

Baker, S.J.C., J. Maciejewski, M.-T. Usuanlele, J. Gilchrist, D.R. Sharma, D. Bulir, M. Smieja, M. Loeb, M.G. Surette, AG. McArthur, & D. Mertz. 2023. Investigating

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Uncategorized

Lab member Mateusz Wlodarski named OUA Award of Merit winner and First Team All-Star!

March 10, 2023 agmcarthur

Read the full story here. BURLINGTON, Ont. – Another impressive regular season is in the books for the McMaster Marauders men’s volleyball team and with

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Congratulations Ph.D. student Jalees Nasir!

February 24, 2023February 24, 2023 agmcarthur

Congratulations Jalees Nasir on being awarded the Dr. Jordon Page Harshman Bursary! The Dr. Jordan Page Harsham Bursary was established in 2011 by the Harshman

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awards COVID19 genomics lab members Mitacs molecular epidemiology SARS-CoV-2

Congratulations Dr. Sheridan Baker – Mitacs Elevate Postdoctoral Fellowship

February 9, 2023March 3, 2023 agmcarthur

Congratulations Dr. Sheridan Baker on being awarded a 2-year Mitacs Elevate Postdoctoral Fellowship, which will allow him to train jointly in clinical epidemiology, molecular epidemiology,

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antibiotic resistance bioinformatics databases genomics lab members

Team Meta-Model Volunteers

January 10, 2023January 10, 2023 agmcarthur

The McArthur Lab welcomes Team Meta-Model, a volunteer curation team led by former BioPharm Co-Op Keaton Smith, working on curating and upgrading the Comprehensive Antibiotic

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antibiotic resistance awards bioinformatics Co-Op positions databases epidemiology genomics IIDR lab members ontologies presentations

IIDR Trainee Day 2022!

November 16, 2022December 9, 2022 agmcarthur

KARYN MUKIRI – Predicting the total resistome KEATON SMITH – Advancements in curation of the Comprehensive Antibiotic Resistance Database JALEES NASIR – Viral fishing expedition:

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